diff options
Diffstat (limited to 'sci-libs')
| -rw-r--r-- | sci-libs/superlu_dist/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-libs/superlu_dist/Manifest | 1 | ||||
| -rw-r--r-- | sci-libs/superlu_dist/files/superlu_dist-3.3-duplicate-symbols.patch | 70 | ||||
| -rw-r--r-- | sci-libs/superlu_dist/metadata.xml | 23 | ||||
| -rw-r--r-- | sci-libs/superlu_dist/superlu_dist-3.3.ebuild | 82 |
5 files changed, 186 insertions, 0 deletions
diff --git a/sci-libs/superlu_dist/ChangeLog b/sci-libs/superlu_dist/ChangeLog new file mode 100644 index 000000000..ba0f9e27c --- /dev/null +++ b/sci-libs/superlu_dist/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-libs/superlu_dist +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*superlu_dist-3.3 (15 Jul 2013) + + 15 Jul 2013; Sébastien Fabbro <bicatali@gentoo.org> + +files/superlu_dist-3.3-duplicate-symbols.patch, +metadata.xml, + +superlu_dist-3.3.ebuild: + sci-libs/superlu_dist: Initial import diff --git a/sci-libs/superlu_dist/Manifest b/sci-libs/superlu_dist/Manifest new file mode 100644 index 000000000..7f97ce664 --- /dev/null +++ b/sci-libs/superlu_dist/Manifest @@ -0,0 +1 @@ +DIST superlu_dist_3.3.tar.gz 2146029 SHA256 d2fd8dc847ae63ed7980cff2ad4db8d117640ecdf0234c9711e0f6ee1398cac2 SHA512 673f5a51a39531d5e59a274dfe3cef95a619fdd3fbe003e306376d12f78e3893813c3718befc1360f905344bb5a68cc9c14d5e3790cbfad7b6d4261cf2c8c170 WHIRLPOOL f3494a1319004b82efac529c84ae5644a765172c333baf186dec981eb8bb7f6801d0775349ebe82faf7c623edd381ceaa8e0ace938f0d38af824f2203a0555df diff --git a/sci-libs/superlu_dist/files/superlu_dist-3.3-duplicate-symbols.patch b/sci-libs/superlu_dist/files/superlu_dist-3.3-duplicate-symbols.patch new file mode 100644 index 000000000..b27647d81 --- /dev/null +++ b/sci-libs/superlu_dist/files/superlu_dist-3.3-duplicate-symbols.patch @@ -0,0 +1,70 @@ +diff -Nur SRC.orig/dcomplex.c SRC/dcomplex.c +--- SRC.orig/dcomplex.c 2013-07-15 13:31:52.013335511 -0700 ++++ SRC/dcomplex.c 2013-07-15 13:41:52.346722312 -0700 +@@ -11,6 +11,7 @@ + + #include <math.h> + #include <stdio.h> ++#include <stdlib.h> + #include "dcomplex.h" + + +diff -Nur SRC.orig/dreadtriple.c SRC/dreadtriple.c +--- SRC.orig/dreadtriple.c 2013-07-15 13:31:52.015335487 -0700 ++++ SRC/dreadtriple.c 2013-07-15 13:32:57.202697327 -0700 +@@ -150,21 +150,4 @@ + } + + +-void dreadrhs(int m, double *b) +-{ +- FILE *fp, *fopen(); +- int i, j; +- +- if ( !(fp = fopen("b.dat", "r")) ) { +- fprintf(stderr, "dreadrhs: file does not exist\n"); +- exit(-1); +- } +- for (i = 0; i < m; ++i) +- fscanf(fp, "%lf\n", &b[i]); +- /*fscanf(fp, "%d%lf\n", &j, &b[i]);*/ +- /* readpair_(j, &b[i]);*/ +- +- fclose(fp); +-} +- + +diff -Nur SRC.orig/xerbla.c SRC/xerbla.c +--- SRC.orig/xerbla.c 2013-07-15 13:31:52.016335478 -0700 ++++ SRC/xerbla.c 2013-07-15 13:51:47.522154563 -0700 +@@ -8,6 +8,7 @@ + September 30, 1994 + </pre> + */ ++#include <stdio.h> + #include "Cnames.h" + + /* Subroutine */ +diff -Nur SRC.orig/zreadtriple.c SRC/zreadtriple.c +--- SRC.orig/zreadtriple.c 2013-07-15 13:31:52.014335499 -0700 ++++ SRC/zreadtriple.c 2013-07-15 13:33:27.409864866 -0700 +@@ -149,19 +149,5 @@ + } + + +-void zreadrhs(int m, doublecomplex *b) +-{ +- FILE *fp, *fopen(); +- int i, j; +- +- if ( !(fp = fopen("b.dat", "r")) ) { +- fprintf(stderr, "zreadrhs: file does not exist\n"); +- exit(-1); +- } +- for (i = 0; i < m; ++i) +- fscanf(fp, "%lf%lf\n", &(b[i].r), &(b[i].i)); +- +- fclose(fp); +-} + + diff --git a/sci-libs/superlu_dist/metadata.xml b/sci-libs/superlu_dist/metadata.xml new file mode 100644 index 000000000..c15766c04 --- /dev/null +++ b/sci-libs/superlu_dist/metadata.xml @@ -0,0 +1,23 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci</herd> +<longdescription lang="en"> + SuperLU is a general purpose library for the direct solution of + large, sparse, nonsymmetric systems of linear equations on high + performance machines. The library is written in C and is callable + from either C or Fortran. The library routines will perform an LU + decomposition with partial pivoting and triangular system solves + through forward and back substitution. The LU factorization routines + can handle non-square matrices but the triangular solves are + performed only for square matrices. The matrix columns may be + preordered (before factorization) either through library or user + supplied routines. This preordering for sparsity is completely + separate from the factorization. Working precision iterative + refinement subroutines are provided for improved backward + stability. Routines are also provided to equilibrate the system, + estimate the condition number, calculate the relative backward + error, and estimate error bounds for the refined solutions. + This is the distributed version (MPI based). +</longdescription> +</pkgmetadata> diff --git a/sci-libs/superlu_dist/superlu_dist-3.3.ebuild b/sci-libs/superlu_dist/superlu_dist-3.3.ebuild new file mode 100644 index 000000000..a829769de --- /dev/null +++ b/sci-libs/superlu_dist/superlu_dist-3.3.ebuild @@ -0,0 +1,82 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-libs/superlu/superlu-4.3.ebuild,v 1.7 2012/12/12 20:31:31 jlec Exp $ + +EAPI=5 + +inherit eutils toolchain-funcs + +MYPN=SuperLU_DIST + +DESCRIPTION="Sparse LU factorization library distributed library" +HOMEPAGE="http://crd.lbl.gov/~xiaoye/SuperLU/" +SRC_URI="${HOMEPAGE}/${PN}_${PV}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples static-libs" + +RDEPEND=" + sci-libs/parmetis + virtual/mpi" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +S="${WORKDIR}/${MYPN}_${PV}" + +src_prepare() { + epatch "${FILESDIR}"/${P}-duplicate-symbols.patch +} + +src_configure() { + sed -i \ + -e 's/^\(PLAT\s*=\).*/\1/' \ + -e "s:^\(CC\s*=\).*:\1 mpicc:" \ + -e "/CFLAGS/s:-fast -Mipa=fast,safe:${CFLAGS} \$(PIC):" \ + -e "s:^\(PREDEFS\s*=\).*:\1 ${CPPFLAGS} -DUSE_VENDOR_BLAS \$(CTHREADS)$:" \ + -e "s:^\(NOOPTS\s*=.*\):\1 \$(PIC):" \ + -e "s:^\(FORTRAN\s*=\).*:\1 mpif77:" \ + -e "s:^\(F90FLAGS\s*=\).*:\1 ${FFLAGS} \$(PIC):" \ + -e "s:^\(ARCH\s*=\).*:\1 $(tc-getAR):" \ + -e "s:^\(RANLIB\s*=\).*:\1 $(tc-getRANLIB):" \ + -e "s:^\(LOADER\s*=\).*:\1 mpicc:" \ + -e "s:^\(LOADOPTS\s*=\).*:\1 ${LDFLAGS} \$(LDTHREADS):" \ + -e '/^FLIBS/d' \ + -e "s:^\(METISLIB\s*=\).*:\1 -lmetis:" \ + -e "s:^\(PARMETISLIB\s*=\).*:\1 -lparmetis:" \ + -e "s:^\(BLASLIB\s*=\).*:\1 $($(tc-getPKG_CONFIG) --libs blas):" \ + -e "s:^\(DSUPERLULIB\s*=\).*:\1 ../lib/libsuperlu_dist.a:" \ + make.inc || die + SONAME=libsuperlu_dist.so.0 + sed -i \ + -e 's|../make.inc|make.inc|' \ + -e "s|../SRC|${EPREFIX}/usr/include/${PN}|" \ + -e '/:.*$(DSUPERLULIB)/s|../lib/$(DSUPERLULIB)||g' \ + -e 's|../lib/$(DSUPERLULIB)|-lsuperlu_dist|g' \ + EXAMPLE/Makefile || die +} + +src_compile() { + emake superlulib \ + PIC="-fPIC" ARCH="echo" ARCHFLAGS="" RANLIB="echo" + $(tc-getCC) ${LDFLAGS} ${LDTHREADS} -shared -Wl,-soname=${SONAME} SRC/*.o \ + $($(tc-getPKG_CONFIG) --libs blas) -lm -o lib/${SONAME} || die + ln -s ${SONAME} lib/libsuperlu_dist.so || die + + use static-libs && rm -f SRC/*.o && emake superlulib \ + PIC="" ARCH="$(tc-getAR)" ARCHFLAGS="cr" RANLIB="$(tc-getRANLIB)" +} + +src_install() { + dolib.so lib/*so* + use static-libs && dolib.a lib/*.a + insinto /usr/include/${PN} + doins SRC/*h + dodoc README + use doc && dodoc DOC/ug.pdf + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins -r EXAMPLE/* make.inc + fi +} |