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Diffstat (limited to 'sci-physics/abinit/abinit-6.6.1.ebuild')
-rw-r--r--sci-physics/abinit/abinit-6.6.1.ebuild204
1 files changed, 204 insertions, 0 deletions
diff --git a/sci-physics/abinit/abinit-6.6.1.ebuild b/sci-physics/abinit/abinit-6.6.1.ebuild
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+++ b/sci-physics/abinit/abinit-6.6.1.ebuild
@@ -0,0 +1,204 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI="3"
+
+inherit autotools eutils multilib toolchain-funcs
+
+DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory"
+HOMEPAGE="http://www.abinit.org/"
+SRC_URI="http://ftp.abinit.org/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE="cuda -debug +fftw +fox gsl +hdf5 mpi +netcdf python -smp +threads -test -vdwxc"
+
+RDEPEND="=sci-libs/bigdft-1.2.0.2
+ sci-libs/etsf_io
+ =sci-libs/libxc-1.0[fortran]
+ sci-physics/atompaw[libxc]
+ fox? ( sci-libs/fox[dom,sax,wcml,wxml] )
+ netcdf? (
+ sci-libs/netcdf[fortran]
+ hdf5? (
+ sci-libs/netcdf[fortran,hdf5]
+ )
+ )
+ hdf5? ( sci-libs/hdf5[fortran] )
+ sci-libs/wannier90
+ virtual/blas
+ virtual/lapack
+ gsl? ( sci-libs/gsl )
+ fftw? (
+ sci-libs/fftw:3.0
+ threads? ( sci-libs/fftw:3.0[threads] )
+ )
+ mpi? ( virtual/mpi )
+ python? ( dev-python/numpy )
+ cuda? ( dev-util/nvidia-cuda-sdk )"
+DEPEND="${RDEPEND}
+ dev-util/pkgconfig
+ dev-perl/Text-Markdown"
+
+WANT_AUTOCONF="latest"
+WANT_AUTOMAKE="latest"
+
+S=${WORKDIR}/${P%[a-z]}
+
+pkg_setup() {
+ # Doesn't compile with gcc-4.0, only >=4.1
+ if [[ $(tc-getFC) == *gfortran ]]; then
+ if [[ $(gcc-major-version) -eq 4 ]] \
+ && [[ $(gcc-minor-version) -lt 1 ]]; then
+ die "Requires gcc-4.1 or newer"
+ fi
+ fi
+ if use smp; then
+ ewarn "OpenMP support mostly broken. Apparently some developers \
+ have used OpenMP semaphors !$ as comment delimiters. Not yet solved \
+ upstream, patch incomplete."
+ if use mpi && has_version sys-cluster/openmpi; then
+ ewarn "Combined with openMPI, OpenMP support is especially likely to crash."
+ fi
+ fi
+}
+
+src_prepare() {
+ epatch "${FILESDIR}"/6.2.2-change-default-directories.patch
+ epatch "${FILESDIR}"/6.0.3-fftw.patch
+ epatch "${FILESDIR}"/6.6.1-openmp.patch
+ eautoreconf
+}
+
+src_configure() {
+ local libs="-L/usr/$(get_libdir)"
+ local modules="-I/usr/$(get_libdir)/finclude"
+ local FoX_libs="${libs} -lFoX_dom -lFoX_sax -lFoX_wcml -lFoX_wxml -lFoX_common -lFoX_utils -lFoX_fsys"
+ local trio_flavor="etsf_io"
+ use fox && trio_flavor="${trio_flavor}+fox"
+ use netcdf && trio_flavor="${trio_flavor}+netcdf"
+ local netcdff_libs="-lnetcdff"
+ use hdf5 && netcdff_libs="${netcdff_libs} -lhdf5_fortran"
+ local fft_flavor="fftw3"
+ local fft_libs="-L/usr/lib"
+ if use threads; then
+ fft_libs="${fft_libs} $(pkg-config --libs fftw3_threads)"
+ fft_flavor="fftw3-threads"
+ else
+ fft_libs="${fft_libs} $(pkg-config --libs fftw3)"
+ fi
+ if use mpi; then
+ MY_FC="mpif90"
+ MY_CC="mpicc"
+ MY_CXX="mpic++"
+ else
+ MY_FC="$(tc-getFC)"
+ MY_CC="$(tc-getCC)"
+ MY_CXX="$(tc-getCXX)"
+ fi
+ if use smp; then
+ MY_FC="${MY_FC} -fopenmp"
+ MY_CC="${MY_CC} -fopenmp"
+ MY_CXX="${MY_CXX} -fopenmp"
+ fi
+ MARKDOWN=Markdown.pl econf \
+ $(use_enable debug debug enhanced) \
+ $(use_enable mpi) \
+ $(use_enable mpi mpi-io) \
+ $(use_enable smp) \
+ $(use_enable vdwxc) \
+ $(use_enable cuda gpu) \
+ "$(use cuda && echo "--with-gpu-flavor=cuda-single")" \
+ "$(use cuda && echo "--with-gpu-prefix=/opt/cuda/")" \
+ "$(use gsl && echo "--with-math-flavor=gsl")" \
+ "$(use gsl && echo "--with-math-incs=$(pkg-config --cflags gsl)")" \
+ "$(use gsl && echo "--with-math-libs=$(pkg-config --libs gsl)")" \
+ --with-linalg-flavor="atlas" \
+ --with-linalg-libs="$(pkg-config --libs lapack)" \
+ --with-trio-flavor="${trio_flavor}" \
+ "$(use netcdf && echo "--with-netcdf-incs=-I/usr/include")" \
+ "$(use netcdf && echo "--with-netcdf-libs=$(pkg-config --libs netcdf) ${netcdff_libs}")" \
+ "$(use fox && echo "--with-fox-incs=${modules}")" \
+ "$(use fox && echo "--with-fox-libs=${FoX_libs}")" \
+ --with-etsf-io-incs="${modules}" \
+ --with-etsf-io-libs="${libs} -letsf_io -letsf_io_utils -letsf_io_low_level" \
+ --with-dft-flavor="libxc+bigdft+atompaw+wannier90" \
+ --with-libxc-incs="${modules}" \
+ --with-libxc-libs="${libs} -lxc" \
+ --with-bigdft-incs="${modules}" \
+ --with-bigdft-libs="${libs} -lpoissonsolver -lbigdft" \
+ --with-atompaw-incs="${modules}" \
+ --with-atompaw-libs="${libs} -latompaw" \
+ --with-wannier90-bins="/usr/bin" \
+ --with-wannier90-incs="${modules}" \
+ --with-wannier90-libs="${libs} -lwannier $(pkg-config --libs lapack)" \
+ "$(use fftw && echo "--with-fft-flavor=${fft_flavor}")" \
+ "$(use fftw && echo "--with-fft-incs=-I/usr/include")" \
+ "$(use fftw && echo "--with-fft-libs=${fft_libs}")" \
+ --with-timer-flavor="abinit" \
+ FC="${MY_FC}" \
+ CC="${MY_CC}" \
+ CXX="${MY_CXX}" \
+ LD="$(tc-getLD)" \
+ FCFLAGS="${FCFLAGS:- ${FFLAGS:- -O2}} ${modules} -I/usr/include"
+}
+
+src_compile() {
+ emake || die
+}
+
+src_test() {
+ einfo "The tests take quite a while, on the order of 1-2 hours"
+ einfo "on an Intel Penryn (2.5 GHz)."
+ cd "${S}"/tests
+ emake tests_min || ewarn "Minimal tests failed"
+ emake tests_paw || ewarn "PAW tests failed"
+ emake tests_gw || ewarn "GW tests failed"
+ emake tests_gw_paw || ewarn "GW-PAW tests failed"
+ emake tests tdft || ewarn "TDFT tests failed"
+ emake tests_bench || ewarn "Benchmarks failed"
+
+ local REPORT
+ for REPORT in $(find . -name report); do
+ REPORT=${REPORT#*/}
+ elog "Parameters and unusual results for ${REPORT%%/*} tests"
+ echo "Parameters and unusual results for ${REPORT%%/*} tests" >>tests_summary.txt
+ while read line; do
+ elog "${line}"
+ echo "${line}" >>tests_summary.txt
+ done \
+ < <(grep -v -e succeeded -e passed ${REPORT})
+ done
+
+ local testdir
+ find . -name "tmp-test*" -print | \
+ while read testdir; do
+ if [ -e summary_of_tests.tar ]; then
+ tar rvf summary_of_tests.tar ${testdir}
+ else tar cvf summary_of_tests.tar ${testdir}
+ fi
+ done
+
+ elog "The full test results will be installed as summary_of_tests.tar.bz2."
+ elog "Also a concise report tests_summary.txt is installed."
+}
+
+src_install() {
+ emake DESTDIR="${D}" install || die "make install failed"
+
+ if use test; then
+ dodoc tests/tests_summary.txt || ewarn "Copying tests summary failed"
+ dodoc tests/summary_tests.tar || ewarn "Copying tests results failed"
+ dodoc tests/summary_of_tests.tar || ewarn "Copying tests results failed"
+ fi
+
+ dodoc KNOWN_PROBLEMS README || die "Copying doc files failed"
+}
+
+pkg_postinst() {
+ if use test; then
+ elog "The full test results will be installed as summary_tests.tar.bz2."
+ elog "Also a concise report tests_summary.txt is installed."
+ fi
+}