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* sci-biology/ensembl-tools: new package, needs more fixes, upstream contactedMartin Mokrejš2016-07-293-0/+60
| | | | Package-Manager: portage-2.3.0
* dev-perl/Bio-DB-HTS: new package, needs more fixesMartin Mokrejš2016-07-293-0/+41
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* sci-biology/twinscan: do not install test.pl, keep track of file collisionMartin Mokrejš2016-07-291-2/+5
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* sci-biology/graf-bin: new binary packageMartin Mokrejš2016-07-283-0/+44
| | | | Package-Manager: portage-2.2.28
* sci-biology/blat: version bump, fix SRC_URI, update patchMartin Mokrejš2016-07-284-0/+82
| | | | Package-Manager: portage-2.2.28
* sci-biology/gatk: upstream uses maven instead of ant, adjust ebuildsMartin Mokrejš2016-07-274-0/+110
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* dev-python/ipywidgets: Raise depsMarius Brehler2016-07-271-3/+3
| | | | Package-Manager: portage-2.2.28
* dev-python/ipywidgets: Drop 5.1.3 (version 5.1.{4,5} in tree)Marius Brehler2016-07-272-37/+0
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* dev-python/ipyparallel: Adopt to ebuild in treeMarius Brehler2016-07-271-2/+4
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* dev-python/ipykernel: Adopt to ebuild in treeMarius Brehler2016-07-271-6/+6
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* dev-python/jupyter_console: Bump to EAPI=6; Adopt to ebuild in treeMarius Brehler2016-07-271-3/+4
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* dev-python/jupyter_core: Bump to EAPI=6; Adopt to ebuild in treeMarius Brehler2016-07-271-3/+3
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* dev-python/jupyter_client: Bump to EAPI=6; Adopt to ebuild in treeMarius Brehler2016-07-271-3/+3
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* dev-python/hdf5storage: Drop oldMarius Brehler2016-07-272-23/+0
| | | | Package-Manager: portage-2.2.28
* sci-libs/clfft: Version bump to 2.12.1Marius Brehler2016-07-272-0/+54
| | | | Package-Manager: portage-2.2.28
* sci-biology/freebayes: adjust to current devel treeMartin Mokrejš2016-07-271-2/+1
| | | | Package-Manager: portage-2.2.28
* sci-biology/SnpEff: version bumpMartin Mokrejš2016-07-272-4/+4
| | | | Package-Manager: portage-2.2.28
* dev-perl/Algorithm-Loops: fix hardcoded version, switch from zip to tar.gz ↵Martin Mokrejš2016-07-262-3/+3
| | | | | | source file Package-Manager: portage-2.2.28
* dev-perl/Algorithm-Loops: version bump due to a LICENSE being stated by authorMartin Mokrejš2016-07-261-1/+1
| | | | Package-Manager: portage-2.2.28
* Psychopy improvements (#652)Horea Christian2016-07-254-33/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | * sci-biology/psychopy: fixed older ebuild Package-Manager: portage-2.3.0 * sci-biology/psychopy: downloading from archives Package-Manager: portage-2.3.0 * sci-biology/psychopy: added format for distfile Package-Manager: portage-2.3.0 * sci-biology/psychopy: downloading as tar.gz Package-Manager: portage-2.3.0 * sci-biology/psychopy: switched to .tar.gz and appropriate ${S} Package-Manager: portage-2.3.0 * sci-biology/psychopy: updated EAPI Package-Manager: portage-2.3.0
* Drop cdfplayer as it is in the tree alreadyJustin Lecher2016-07-244-209/+0
| | | | | | Fixes gentoo-science/sci#650 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/biopython: version bump with one minor upstream patchMartin Mokrejš2016-07-234-0/+156
| | | | Package-Manager: portage-2.2.28
* Update local USE descriptionChristoph Junghans2016-07-221-28/+2
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* sys-cluster/hpx: moved to gx86Christoph Junghans2016-07-227-432/+0
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* sci-libs/fftw: moved to gx86Christoph Junghans2016-07-203-243/+0
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* Merge branch 'master' of ssh://github.com/gentoo-science/sciChristoph Junghans2016-07-2010-205/+180
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| * Merge pull request #649 from TheChymera/nipypeJustin Lecher2016-07-203-2/+39
| |\ | | | | | | sci-libs/nipype version bump
| | * sci-libs/nipype: corrected PV reference and bumped to newest versionHorea Christian2016-07-193-1/+38
| | | | | | | | | | | | Package-Manager: portage-2.3.0
| | * sci-libs/nipype: taking version number from ebuild filenameHorea Christian2016-07-191-2/+2
| | | | | | | | | | | | Package-Manager: portage-2.3.0
| * | Merge pull request #634 from akreal/sci-misc/kaldiJustin Lecher2016-07-207-203/+141
| |\ \ | | |/ | |/| sci-misc/kaldi: version bump; add speex USE flag
| | * sci-misc/kaldi: version bump; add speex USE flagPavel Denisov2016-07-207-203/+141
| |/ | | | | | | Package-Manager: portage-2.3.0
* / sci-physics/hoomd-blue: broken, will be moved to gx86Christoph Junghans2016-07-202-76/+0
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* sci-physics/espresso: brocken, moved to gx86Christoph Junghans2016-07-182-148/+0
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* sci-libs/mkl: non-maintainer commit, fixing issue #647Martin Mokrejš2016-07-182-4/+4
| | | | Package-Manager: portage-2.2.28
* sci-biology/plinkseq: zap bundled dev-libs/protobuf; needs more fixesMartin Mokrejš2016-07-181-3/+10
| | | | Package-Manager: portage-2.2.28
* sci-physics/espresso++: moved to gx86Christoph Junghans2016-07-172-61/+0
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* sci-biology/stampy: does not work with python-3.4 at least, works with 2.7Martin Mokrejš2016-07-151-1/+3
| | | | Package-Manager: portage-2.2.28
* sci-biology/stampy: new package; installs into wrong PYTHON library pathMartin Mokrejš2016-07-151-0/+22
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* sci-biology/stampy: new package; installs into wrong PYTHON library pathMartin Mokrejš2016-07-153-0/+43
| | | | Package-Manager: portage-2.2.28
* sci-biology/biobambam2: an updated package of sci-biology/biobambam, more ↵Martin Mokrejš2016-07-152-0/+51
| | | | | | ebuild tweaks Package-Manager: portage-2.2.28
* sc-libs/libmaus2: minor polishingMartin Mokrejš2016-07-151-1/+6
| | | | Package-Manager: portage-2.2.28
* sci-libs/libmaus2: new package although a version bump of sci-libs/libmausMartin Mokrejš2016-07-142-0/+47
| | | | | | | I think this and the parental libmaus package will need a fix on the LICENSE line (they are not only GPL-v3). Package-Manager: portage-2.2.28
* sci-libs/votca-tools: moved to gx86Christoph Junghans2016-07-142-72/+0
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* sci-chemistry/votca-csg: moved to gx86Christoph Junghans2016-07-142-130/+0
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* sci-chemistry/votca-csgapps: moved to gx86Christoph Junghans2016-07-142-44/+0
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* sci-chemistry/gromacs: moved to gx86Christoph Junghans2016-07-139-1687/+0
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* dev-lang/ispc: moved to gx86Christoph Junghans2016-07-132-63/+0
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* Merge branch 'master' of git+ssh://git.gentoo.org/proj/sciMartin Mokrejš2016-07-1222-1069/+72
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| * dev-python/pyfftw: Add scipy to depsMarius Brehler2016-07-121-0/+1
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| * dev-python/pyfftw: Version bump to 0.10.4, drop 0.10.1Marius Brehler2016-07-122-1/+2
| | | | | | | | Package-Manager: portage-2.2.28