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* dev-python/spikeinterface: new package, add 0.96.1HEADmasterHorea Christian9 hours3-0/+113
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/llvmlite: higher llvm slots workHorea Christian9 hours1-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/heudiconv: revision bump, test and dep updateHorea Christian9 hours1-5/+5
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-chemistry/relion: Update relion ebuildsAlexey Shvetsov12 hours4-2/+99
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-chemistry/ctffind: add 4.1.10, 4.1.13Alexey Shvetsov12 hours3-0/+76
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* dev-python/heudiconv/files: removed unneeded filesHorea Christian26 hours3-63/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/heudiconv: new package, add 0.11.6Horea Christian26 hours6-0/+131
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/distinctipy: new package, add 1.2.2Horea Christian35 hours4-0/+51
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/tridesclous: new package, add 1.6.4, 1.6.6Horea Christian38 hours4-0/+220
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/neo: new package, add 0.11.0, 0.11.1Horea Christian38 hours4-0/+142
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdbscan: enable py3.11 and disable py3.9Horea Christian38 hours1-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdbscan: add pypi upstream metadataHorea Christian38 hours1-0/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdbscan: new package, add 0.8.26, 0.8.29Horea Christian44 hours4-0/+96
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: drop 2.0.1-r1Horea Christian2 days2-40/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdmf: PYTHON_COMPAT bump 3.11Horea Christian2 days4-4/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdmf: drop 3.1.1-r1Horea Christian2 days2-39/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdmf: add 3.4.7, 3.5.0_p1, 3.5.1Horea Christian2 days5-0/+274
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: using gh source file suffixHorea Christian3 days4-6/+6
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: add 0.5.1_pre20230103Horea Christian3 days2-0/+53
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: version bump 5.0.0Horea Christian3 days2-0/+36
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: version bump 4.0.0Horea Christian3 days2-0/+38
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/cadquery: masked package, because:Horea Christian3 days1-1/+3
| | | | | | | it depends on dev-python/cadquery-ocp, which has been masked in the antecedent commit. Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/cadquery-ocp: hard masked version, due to:Horea Christian3 days1-1/+3
| | | | | | opencascade slot 0/7.5 having been removed from ::gentoo in ff9032e688571dde15e9d36cebedf5a247ded1b8 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: version bump 1.8.4Horea Christian3 days3-0/+668
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/phusion2: masked, because:Horea Christian5 days1-1/+3
| | | | | | dependency sci-biology/phrap removed from ::gentoo in f3cfb83adfc5dd1b85d0c9dce5ffbf166b25f4e4 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/numpy: new package, add 1.23.5Horea Christian5 days4-0/+265
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/traits: PYTHON_COMPAT bumpHorea Christian5 days3-6/+6
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/traits: added highest version before compat-breaking 6.4.*Horea Christian5 days3-2/+40
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: revbump for numpy compatibilityHorea Christian6 days1-6/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/datalad: add 0.18.1Horea Christian7 days2-0/+75
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/dandi-cli: drop 0.38.0Horea Christian2023-01-162-88/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/dandi-cli: add 0.48.0Horea Christian2023-01-162-0/+80
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* profiles: sci-biology/longstitch dep stack clearedHorea Christian2023-01-151-1/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* profiles: sci-biology/arcs dep stack clearedHorea Christian2023-01-151-1/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/holoviews: enabled test suite and deps (still fails)Horea Christian2023-01-151-0/+15
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* profiles: py3.10 available for holoviews stackHorea Christian2023-01-151-2/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/holoviews: add 1.15.3Horea Christian2023-01-152-0/+32
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/holoviews: update EAPI and PYTHON_COMPATHorea Christian2023-01-151-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/panel: Trying to use build variable instead of patchHorea Christian2023-01-151-0/+9
| | | | | | Still won't work.. Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/panel: add 0.14.1, 0.14.2Horea Christian2023-01-154-0/+159
| | | | | | Also replaced sed with PATCH to respect Python syntax Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/panel: update EAPI and PYTHON_COMPATHorea Christian2023-01-151-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/colorcet: using PEP517Horea Christian2023-01-152-0/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/colorcet: restricted failing test suiteHorea Christian2023-01-151-0/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pyviz_comms: added notice for missing test distributionHorea Christian2023-01-142-0/+8
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pyviz_comms: add 2.2.0Horea Christian2023-01-142-0/+19
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pyviz_comms: update EAPI and PYTHON_COMPATHorea Christian2023-01-141-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/colorcet: add 3.0.1Horea Christian2023-01-142-0/+28
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/colorcet: update EAPI and PYTHON_COMPATHorea Christian2023-01-141-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/param: added reference for upstream reportHorea Christian2023-01-141-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pyct: update EAPI and PYTHON_COMPATHorea Christian2023-01-141-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>