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* sci-libs/iRODS: bump to 4.2.11HEADmasterAndrew Ammerlaan11 hours3-21/+78
| | | | | | | Finally the configure phase passes Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/rdkit: bump to 2021.09.4Andrew Ammerlaan12 hours5-120/+81
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-mathematics/open-axiom: remove dead packageAndrew Ammerlaan13 hours3-53/+0
| | | | | | Last release 2013, does not compile Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/fslpy: cleanup oldAndrew Ammerlaan14 hours4-98/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-visualization/fsleyes: bump to 1.3.3Andrew Ammerlaan14 hours7-306/+66
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/openmx: bump to patch releaseAndrew Ammerlaan15 hours2-11/+34
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-visualization/fsleyes-props: bump to 1.7.3Andrew Ammerlaan15 hours3-60/+11
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-visualization/fsleyes-widgets: bump to 0.12.2Andrew Ammerlaan15 hours3-60/+10
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-perl/Bio-EnsEMBL: remove fundamentally broken packageAndrew Ammerlaan16 hours3-43/+0
| | | | | | how is this even supposed to work? Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-cpp/blitz: drop liveAndrew Ammerlaan41 hours1-48/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/blasr: bump to 5.3.5Andrew Ammerlaan41 hours2-8/+7
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/libblasr: bump to 5.3.5Andrew Ammerlaan41 hours2-8/+8
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/pbbam: bump to 1.8.1Andrew Ammerlaan41 hours2-2/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/pbcopper: bump to 1.9.5Andrew Ammerlaan41 hours2-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/pbbam: drop liveAndrew Ammerlaan41 hours1-26/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/salmon: drop liveAndrew Ammerlaan41 hours1-32/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-visualization/surf-ice: sync 9999 with release ebuildAndrew Ammerlaan41 hours1-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-chemistry/MotionCor2: fix metadataAndrew Ammerlaan41 hours1-3/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/fslpy: drop redundant uri renameAndrew Ammerlaan41 hours1-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* licenses: remove unused licenseAndrew Ammerlaan41 hours1-519/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-mathematics/scilab: remove scilab in favor of scilab-binAndrew Ammerlaan41 hours27-1835/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-java: cleanup old java packagesAndrew Ammerlaan42 hours72-3199/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/jhdf5: remove old java packageAndrew Ammerlaan42 hours4-52/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/conrad: remove ancient java packageAndrew Ammerlaan42 hours4-70/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-lang/terra: remove broken package without consumersAndrew Ammerlaan42 hours4-66/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-misc/opennlp-maxent: remove old java packageAndrew Ammerlaan42 hours4-65/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/cramtools: remove old java packageAndrew Ammerlaan42 hours4-43/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/cramtools: remove old java packageAndrew Ammerlaan42 hours4-51/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/quorum: remove old java packageAndrew Ammerlaan42 hours5-122/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/jigsaw: remove old java packageAndrew Ammerlaan42 hours4-46/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/jtreeview: remove old java packageAndrew Ammerlaan42 hours5-91/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-misc/europa-bin: remove packageAndrew Ammerlaan42 hours4-74/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* media-libs/imgui: remove opticks libAndrew Ammerlaan42 hours4-95/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* media-libs/DualContouringSample: remove opticks libAndrew Ammerlaan42 hours3-69/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* media-libs/yocto-gl: remove opticks libAndrew Ammerlaan42 hours3-47/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-util/bcm: remove opticks libAndrew Ammerlaan42 hours4-40/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/opticks: remove package (2)Andrew Ammerlaan42 hours2-107/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* media-libs/implicitmesher: remove packageAndrew Ammerlaan42 hours4-77/+0
| | | | | | lib for opticks, but does not seem to be required for new versions anyway Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/opticks: remove packageAndrew Ammerlaan42 hours10-209/+29
| | | | | | This is a mess, and needs a bump Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-chemistry/MotionCor2: remove cuda flagAndrew Ammerlaan42 hours2-6/+0
| | | | | | note says it has cuda 11 support but I can't test due to fetch restriction Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/opticks-okconf: delete package, it is identical to opticksAndrew Ammerlaan43 hours3-65/+0
| | | | | | except that it doesn't work Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-libs/optix: cleanup oldAndrew Ammerlaan43 hours5-161/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-libs/optix: add version 7.4.0Andrew Ammerlaan43 hours2-0/+38
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/sphinx-astropy: bump to version 1.7.0Andrew Ammerlaan43 hours2-5/+6
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/sphinx-automodapi: bump to version 0.14.1Andrew Ammerlaan43 hours2-5/+5
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/astropy-healpix: bump to version 0.6Andrew Ammerlaan43 hours2-4/+5
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/astropy-sphinx-theme: enable python3_10Andrew Ammerlaan43 hours1-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/astropy: bump to version 5.0Andrew Ammerlaan43 hours2-7/+8
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/astropy-helpers: enable python3_10Andrew Ammerlaan43 hours1-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/extension-helpers: enable python3_10Andrew Ammerlaan43 hours1-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>