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* sci-biology/scaffold_builder: BDEPEND on unzipAndrew Ammerlaan2021-01-191-0/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/psx: properly name tarballAndrew Ammerlaan2021-01-192-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/portrait: properly name tarballAndrew Ammerlaan2021-01-192-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/pileup: properly name tarballAndrew Ammerlaan2021-01-192-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/nrcl: remove redundant renameAndrew Ammerlaan2021-01-191-2/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/ncbi-blast+: fix rdependAndrew Ammerlaan2021-01-191-1/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/nilearn: remove executable bitAndrew Ammerlaan2021-01-191-0/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/mgblast: properly name tarballAndrew Ammerlaan2021-01-192-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/maker: drop oldAndrew Ammerlaan2021-01-192-155/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/imagej: depend on app-arch/unzipAndrew Ammerlaan2021-01-192-2/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/hisat2: depend on unzipAndrew Ammerlaan2021-01-191-2/+4
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/genomeview-bin: bdepend on unzipAndrew Ammerlaan2021-01-191-0/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/exonerate-gff3: add missing RESTRICT="!test? ( test )"Andrew Ammerlaan2021-01-191-1/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/diamond: properly name tarballAndrew Ammerlaan2021-01-192-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/coral: use P in SRC_URIAndrew Ammerlaan2021-01-191-2/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/conrad: depend on unzipAndrew Ammerlaan2021-01-191-0/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/cdbfasta: properly name tarballAndrew Ammerlaan2021-01-192-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/beaglecall: depend on unzipAndrew Ammerlaan2021-01-191-2/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/autoeditor: add missing RESTRICT="!test? ( test )"Andrew Ammerlaan2021-01-191-1/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/align_to_scf: use PV in SRC_URIAndrew Ammerlaan2021-01-191-2/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/act-bin: depend on unzipAndrew Ammerlaan2021-01-191-2/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/Trinotate: properly name tarballAndrew Ammerlaan2021-01-192-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/TransDecoder: remove unnecessary slash stripAndrew Ammerlaan2021-01-191-1/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/SolexaQA: depend on unzipAndrew Ammerlaan2021-01-191-2/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/IMAGE: bdepend on unzipAndrew Ammerlaan2021-01-191-0/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/BBmap: set use default for openmpiAndrew Ammerlaan2021-01-191-1/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-util/mad-numdiff: remove HOMEPAGE from SRC_URIAndrew Ammerlaan2021-01-192-2/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-util/waf: rdepend on python_depsAndrew Ammerlaan2021-01-191-0/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-util/f90cache: remove unnecessary slash stripAndrew Ammerlaan2021-01-191-1/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-python/xgboost: fix metadata indentationAndrew Ammerlaan2021-01-191-1/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-python/sphinx-argparse: remove trailing whitespaceAndrew Ammerlaan2021-01-191-3/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-python/python-gantt: properly name tarballAndrew Ammerlaan2021-01-192-4/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-python/kmapper: drop oldAndrew Ammerlaan2021-01-192-45/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-python/json_tricks: drop py3.6Andrew Ammerlaan2021-01-191-6/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-python/fiat: properly name tarballAndrew Ammerlaan2021-01-192-9/+6
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-perl/Config-Std: drop oldAndrew Ammerlaan2021-01-192-26/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-lang/terra: remove unused test flagAndrew Ammerlaan2021-01-191-2/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-java/netcdf: add dep on app-arch/unzipAndrew Ammerlaan2021-01-191-0/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-java/jlatexmath-fop: add dep on unzipAndrew Ammerlaan2021-01-191-1/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-mathematics/netgen: use httpsAndrew Ammerlaan2021-01-193-6/+6
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-mathematics/lie: use httpsAndrew Ammerlaan2021-01-191-2/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-misc/elmer*: update homepageAndrew Ammerlaan2021-01-1912-22/+22
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/genepop: fix fetch, cmake-utils --> cmakeAndrew Ammerlaan2021-01-193-38/+6
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-python/regions: use httpsAndrew Ammerlaan2021-01-191-1/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/salmon: remove non-existing deps included in pufferfishAndrew Ammerlaan2021-01-191-2/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/salmon: add version 1.4.0Andrew Ammerlaan2021-01-193-58/+64
| | | | | | Closes: https://github.com/gentoo/sci/pull/1013 Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/pufferfish: new dep of salmonAndrew Ammerlaan2021-01-194-0/+81
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-java/hdf-java: remove obsolete packAndrew Ammerlaan2021-01-196-288/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/aghermann: fix fetchAndrew Ammerlaan2021-01-192-10/+7
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/argo-bin: remove pack, upstream goneAndrew Ammerlaan2021-01-195-73/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>