| Commit message (Collapse) | Author | Age | Files | Lines | ||
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| | * | sci-chemistry/freeon-20130912: Added new version. |   Nicolas Bock | 2013-09-14 | 3 | -0/+44 | |
| | | | | | | | | | Package-Manager: portage-2.2.1 | |||||
| | * | added STFC license |   Christoph Junghans | 2013-09-14 | 1 | -0/+67 | |
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| | * | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci | Nicolas Bock | 2013-09-14 | 14 | -4/+2581 | |
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| | | * | Support at least when user passes USE='gnutls -ssl -openssl' but what we ↵ |   Martin Mokrejš | 2013-09-14 | 2 | -1/+12 | |
| | | | | | | | | | | | | | really want is to prefer gnutls over openssl if both are available on the system. | |||||
| | | * | Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with ↵ | Martin Mokrejš | 2013-09-14 | 3 | -4/+20 | |
| | | | | | | | | | | | | | line offset changes. | |||||
| | | * | Fix URL to point to a public SVN repository | Martin Mokrejš | 2013-09-14 | 5 | -2/+35 | |
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| | | * | more 12.0.0 cleanup, still not working | Martin Mokrejš | 2013-09-14 | 5 | -7/+50 | |
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| | | * | add ↵ | Martin Mokrejš | 2013-09-13 | 3 | -2/+28 | |
| | | | | | | | | | | | | | ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch; get around a bug in the C++ Toolkit's handling of --without-runpath with certain linker versions by running configure with -Wl,-rpath-link,_build/lib in LDFLAGS (assuming _build is an absolute path; otherwise, prepend /home/mmokrejs/proj/sci/sci-biology/ncbi-tools++/) [from Aaron Ucko]. | |||||
| | | * | fix version number in the ebuild | Martin Mokrejš | 2013-09-13 | 1 | -1/+1 | |
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| | | * | Remove redundant connect from DLL_LIB lines. | Martin Mokrejš | 2013-09-13 | 1 | -0/+1 | |
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| | | * | Remove redundant connect from DLL_LIB lines. | Martin Mokrejš | 2013-09-13 | 1 | -0/+16 | |
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| | | * | Remove redundant connect from DLL_LIB lines. | Martin Mokrejš | 2013-09-13 | 2 | -2/+2 | |
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| | | * | No, the fix-creaders-linking is needed for 12.0.0 as well. | Martin Mokrejš | 2013-09-13 | 3 | -0/+25 | |
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| | | * | Latest release which needs so far only the two Gentoo patches. Would be ↵ | Martin Mokrejš | 2013-09-13 | 3 | -0/+2383 | |
| | | | | | | | | | | | | | better to drop from their filename to avoid their duplication I think. | |||||
| | | * | add glew to dependencies inferrred via mesa; fix lib/libxobjread.so: ↵ | Martin Mokrejš | 2013-09-13 | 3 | -2/+25 | |
| | | | | | | | | | | | | | undefined reference to 'AlignmentFileFree' message by upstream patch | |||||
| | * | | sys-cluster/charm-6.5.1: Small fix in patch to make printing less verbose. | Nicolas Bock | 2013-09-14 | 2 | -1/+4 | |
| | | | | | | | | | | | | | Package-Manager: portage-2.2.1 | |||||
| | * | | sci-chemistry/namd-2.9: Version bump; ported patches from namd-2.7_beta2-r1 ↵ | Nicolas Bock | 2013-09-14 | 6 | -0/+297 | |
| | |/ | | | | | | | | | | | and bumped EAPI to 5. Package-Manager: portage-2.2.1 | |||||
| | * | sci-libs/itk: Version bump. Cleaned-up ebuild and metadata.xml |   Sébastien Fabbro | 2013-09-11 | 6 | -193/+132 | |
| | | | | | | | | | Package-Manager: portage-2.2.01.22288-prefix | |||||
| | * | removed obsolete license | Sébastien Fabbro | 2013-09-11 | 1 | -505/+0 | |
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| | * | sync with tree | Sébastien Fabbro | 2013-09-11 | 4 | -8/+6 | |
| | | | | | | | | | Package-Manager: portage-2.2.01.22288-prefix | |||||
| | * | sci-biology/biopython-1.62: version bump | Martin Mokrejš | 2013-09-11 | 1 | -0/+10 | |
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| | * | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci | Martin Mokrejš | 2013-09-11 | 2 | -7/+13 | |
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| | | * | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci | Nicolas Bock | 2013-09-11 | 15 | -7/+802 | |
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| | | * | | sys-cluster/charm-6.5.1: Fix patch for the last time. | Nicolas Bock | 2013-09-11 | 2 | -7/+13 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.2 | |||||
| | * | | | sci-biology/biopython-1.62: version bump | Martin Mokrejš | 2013-09-11 | 2 | -0/+54 | |
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| | * | | Partial success on removal of all crazy libraries and includes from CFLAGS ↵ | Martin Mokrejš | 2013-09-11 | 10 | -6/+722 | |
| | | | | | | | | | | | | | | | | | | | and LDFLAGS used throught EMBOSS sources. While compile commandline are now clean still libtool is passed with LDFLAGS carrying over the many X11 and graphics libraries. Seems the source is ltmain.sh which uses on the linker lines but editing m4/libtool.m4 is not the right way to do it. Same applies to ltmain.sh in top-level directory. Any volunteers? Bug #394425 Package-Manager: portage-2.1.12.2 | |||||
| | * | | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci | Martin Mokrejš | 2013-09-11 | 8 | -0/+504 | |
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| | | * | sys-cluster/charm-6.5.1-r1: Backported patch just added to correct upstream ↵ | Nicolas Bock | 2013-09-11 | 2 | -44/+15 | |
| | | | | | | | | | | | | | | | | | | | version. Package-Manager: portage-2.2.2 | |||||
| | | * | sys-cluster/charm-6.5.1-r1: Added patch from ticket 294. | Nicolas Bock | 2013-09-11 | 3 | -0/+88 | |
| | | | | | | | | | | | | | Package-Manager: portage-2.2.2 | |||||
| | | * | Version bump to sys-cluster/charm-6.5.1-r1 to push CkMigrationMgr patch to ↵ | Nicolas Bock | 2013-09-11 | 3 | -1/+201 | |
| | | | | | | | | | | | | | | | | | | | users. Package-Manager: portage-2.2.1 | |||||
| | | * | Added patch to fix bug in CkReductionMgr::reduceMessages(). | Nicolas Bock | 2013-09-11 | 3 | -0/+40 | |
| | | | | | | | | | | | | | | | | | | | This issues has been reported upstream (issue #287). Package-Manager: portage-2.2.1 | |||||
| | | * | Merge pull request #80 from gerddie/master |   Sébastien Fabbro | 2013-09-10 | 4 | -0/+205 | |
| | | |\ | | | | | | | | | Add sci-libs/itk Closes: #124241 - merging will need work. | |||||
| | | | * | update the dependencies and handling of missing varibles |   Gert Wollny | 2013-06-15 | 2 | -24/+37 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | After some more inspection of the build system it turns out that now hdf5 is always required, so I removed the useflag and made the dependency obligarory. In addition, I changed the handling when the environment variables are not set i.e. only if python bindings are requested and only for the *DIMS variable the ebuold will bail out, for the memory size the default fallback "1" will be used if it is not set. I also added the sse2 use flag since VNL can profit from it. | |||||
| | | | * | change digests | Gert Wollny | 2013-06-12 | 1 | -3/+0 | |
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| | | | * | replace maintainer line | Gert Wollny | 2013-06-12 | 1 | -1/+1 | |
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| | | | * | replace eerror by elog, and correct indetion | Gert Wollny | 2013-06-12 | 1 | -14/+14 | |
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| | | | * | remove superfluos line in the patch | Gert Wollny | 2013-06-12 | 1 | -1/+0 | |
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| | | | * | correct use flag help | Gert Wollny | 2013-06-12 | 2 | -3/+3 | |
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| | | | * | use cmake-utils also for itkv3compat | Gert Wollny | 2013-06-12 | 2 | -5/+2 | |
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| | | | * | remove obsolete check for environment variables | Gert Wollny | 2013-06-12 | 2 | -7/+1 | |
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| | | | * | correct more indentions | Gert Wollny | 2013-06-12 | 2 | -8/+7 | |
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| | | | * | Further cleaup the ebuild: | Gert Wollny | 2013-06-12 | 3 | -34/+16 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - correct indentions - remove patented use flag since it is an unused leftover from the itk-3.X times - remove some out-commented lines | |||||
| | | | * | Add a pkg_pretent section to force the user to set certain variables in ↵ | Gert Wollny | 2013-06-12 | 2 | -7/+42 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | make.conf Specifically, ITK_COMPUTER_MEMORY_SIZE must always be set and ITK_WRAP_DIMS must be set when python bindings are enabled. | |||||
| | | | * | correct dash character and fftw slot |   Gert Wollny | 2013-06-11 | 1 | -2/+2 | |
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| | | | * | correct most of the issues given in the pull request | Gert Wollny | 2013-06-11 | 1 | -22/+21 | |
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| | | | * | Add line break and herd | Gert Wollny | 2013-06-11 | 1 | -3/+3 | |
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| | | | * | bump to latest EAPI | Gert Wollny | 2013-06-11 | 1 | -1/+1 | |
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| | | | * | fix most repoman issues | Gert Wollny | 2013-06-10 | 1 | -3/+3 | |
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| | | | * | Merge branch 'master' of github.com:gerddie/sci | Gert Wollny | 2013-06-10 | 0 | -0/+0 | |
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| | | | | * | add the Manifest file | Gert Wollny | 2013-06-10 | 1 | -0/+1 | |
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