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path: root/sci-biology/ncbi-tools++
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* Convert all $Header$ to $Id$ tags as it has be done in gentoo.gitJustin Lecher2015-08-172-2/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Fix repoman fatal error (invalid USE description)Andrew Savchenko2015-07-172-0/+6
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* added dep needed at build-timeHorea Christian2015-06-232-0/+4
| | | | Package-Manager: portage-2.2.20
* Revert "Gentoo does https by default now"Justin Lecher2015-06-211-1/+1
| | | | This reverts commit 98718494343af4990facdefb0033471686e975a6.
* Gentoo does https by default nowJustin Lecher2015-06-211-1/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/ncbi-tools++: added upstream patch to compile against ↵Martin Mokrejš2015-06-113-0/+120
| | | | | | sys-libs/db-6.0.30 Package-Manager: portage-2.2.18
* sci-biology/ncbi-tools++: re-added KEYWORDSMartin Mokrejš2015-04-172-1/+6
| | | | Package-Manager: portage-2.2.18
* sci-biology/ncbi-tools++: fix SLOT operators; correct python depsJustin Lecher2015-02-182-8/+15
| | | | Package-Manager: portage-2.2.17
* ncbi-tools++: fix prefix libdir, muparser/hdf5 use flagsmschubert2014-10-091-3/+3
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* major clean, drop old version and unused patchesChristoph Junghans2014-09-1515-4662/+15
| | | | Package-Manager: portage-2.2.8-r1
* sci-biology/ncbi-tools++-12.0.0: improved comment textMartin Mokrejš2014-06-261-1/+4
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* sci-biology/ncbi-tools++: so require media-libs/mesa[osmesa] for USE=mesaMartin Mokrejš2014-06-263-3/+3
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* sci-biology/ncbi-tools++: reworked patchMartin Mokrejš2014-06-261-6/+6
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* sci-biology/ncbi-tools++: bring back USE=mesa although it is about OSMesaMartin Mokrejš2014-06-263-11/+9
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* sci-biology/ncbi-tools++: fix 'make install if USE=pchMartin Mokrejš2014-06-262-0/+12
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* sci-biology/ncbi-tools++: dropped USE=ftds as it is useless and recommended ↵Martin Mokrejš2014-06-263-24/+17
| | | | by upstream to be disabled altogether
* sci-biology/ncbi-tools++-12.0.0: drop forgotten IUSE=sslMartin Mokrejš2014-06-261-1/+1
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* sci-biology/ncbi-tools++-12.0.0: added a blocker with sci-biology/sra_sdkMartin Mokrejš2014-06-261-0/+1
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* sci-biology/ncbi-tools++-12.0.0: more places where to drop ':%=%'Martin Mokrejš2014-06-261-1/+1
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* sci-biology/ncbi-tools++-12.0.0: more entries to ↵Martin Mokrejš2014-06-261-0/+22
| | | | ncbi-tools++-12.0.0-drop-STATIC-from-LIB.patch
* sci-biology/ncbi-tools++-12.0.0: added the patch istelf dropping :%=% from ↵Martin Mokrejš2014-06-261-0/+22
| | | | LIB settings
* sci-biology/ncbi-tools++-12.0.0: dropping :%=% from LIB settingsMartin Mokrejš2014-06-261-0/+1
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* sci-biology/ncbi-tools++-9.0.0*: dropped altogether openssl-related USE ↵Martin Mokrejš2014-06-262-13/+5
| | | | flags and configure arguments (per upstream info nothing in the public code uses openssl and the configure test is there for their internal reasonings); dropped gnutls[lzo] requirement which was only need for unpatched 9.0.0 version; however, --with-lzo is still advantageous for http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__Compression.htmlhttp://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__CompressionStreams.html
* sci-biology/ncbi-tools++-12.0.0: dropped altogether openssl-related USE ↵Martin Mokrejš2014-06-261-3/+1
| | | | flags and configure arguments (per upstream info nothing in the public code uses openssl and the configure test is there for their internal reasonings); dropped gnutls[lzo] requirement which was only need for unpatched 9.0.0 version; however, --with-lzo is still advantageous for http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__Compression.htmlhttp://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__CompressionStreams.html
* sci-biology/ncbi-tools++-12.0.0: cleanup comments and shutdown a false alarm ↵Martin Mokrejš2014-06-261-2/+1
| | | | message from mv
* sci-biology/ncbi-tools++-12.0.0: dropped unneeded patchMartin Mokrejš2014-06-261-1660/+0
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* sci-biology/ncbi-tools++-12.0.0: dropped unneeded patches, added direct ↵Martin Mokrejš2014-06-263-67/+2
| | | | dependency on glew because the dependency on virtual/opengl does not work
* sci-biology/ncbi-tools++-12.0.0: re-added update patch to configure so that ↵Martin Mokrejš2014-06-252-44264/+67
| | | | we can avoid eautoconf until there is autoconf-2.59 system-wide
* sci-biology/ncbi-tools++-12.0.0: install colliding files under a name ↵Martin Mokrejš2014-06-251-2/+6
| | | | suffixed by a plus sign
* sci-biology/ncbi-tools++-12.0.0: first compile-able ebuild, wow, huge thanks ↵Martin Mokrejš2014-06-254-6/+444
| | | | to Aaron Ucko from NCBI developers on the cpp@ mailing list
* more changes to get ncbi-tools++-12.0.0 compiledMartin Mokrejš2014-06-256-1448/+1968
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* dropped the duplicate part from the patchMartin Mokrejš2014-06-231-1660/+0
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* add an extra patch for configure until we find a way to ensure user has ↵Martin Mokrejš2014-06-232-6/+46083
| | | | autoconf-2.59 or for ncbi-tools++-12.0.0 may have autoconf-2.60
* updating the ChangeLog to note where the ↵Martin Mokrejš2014-06-231-1/+8
| | | | ncbi-tools++-12.0.0-support-autoconf-2.60.patch comes from
* add patches for 12.0.0 to support autoconf-2.60 (so far 2.59 was needed)Martin Mokrejš2014-06-232-3/+1667
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* sci-biology/ncbi-tools++: added a note about a taxonomy database add-on not ↵Martin Mokrejš2014-06-023-0/+12
| | | | yet installed by Gentoo
* Configure worksJustin Lecher2014-05-061-8/+8
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/ncbi-tools++: add deps on jpeg-turboMartin Mokrejš2014-03-251-1/+1
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* Sanitize ebuild headerJustin Lecher2014-01-303-6/+6
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Start to work on it againJustin Lecher2014-01-253-449/+303
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Support at least when user passes USE='gnutls -ssl -openssl' but what we ↵Martin Mokrejš2013-09-142-1/+12
| | | | really want is to prefer gnutls over openssl if both are available on the system.
* Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with ↵Martin Mokrejš2013-09-143-4/+20
| | | | line offset changes.
* Fix URL to point to a public SVN repositoryMartin Mokrejš2013-09-145-2/+35
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* more 12.0.0 cleanup, still not workingMartin Mokrejš2013-09-145-7/+50
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* add ↵Martin Mokrejš2013-09-133-2/+28
| | | | ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch; get around a bug in the C++ Toolkit's handling of --without-runpath with certain linker versions by running configure with -Wl,-rpath-link,_build/lib in LDFLAGS (assuming _build is an absolute path; otherwise, prepend /home/mmokrejs/proj/sci/sci-biology/ncbi-tools++/) [from Aaron Ucko].
* fix version number in the ebuildMartin Mokrejš2013-09-131-1/+1
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* Remove redundant connect from DLL_LIB lines.Martin Mokrejš2013-09-131-0/+1
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* Remove redundant connect from DLL_LIB lines.Martin Mokrejš2013-09-131-0/+16
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* Remove redundant connect from DLL_LIB lines.Martin Mokrejš2013-09-132-2/+2
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* No, the fix-creaders-linking is needed for 12.0.0 as well.Martin Mokrejš2013-09-133-0/+25
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