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* sci-biology/tablet-bin: version bump; added coveragestats.py (requires dos2unix)Martin Mokrejš2016-04-202-2/+6
* Merge remote-tracking branch 'github/master'Marius Brehler2016-04-1325-783/+1
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| * sci-biology/pysam: Remove old, latest 0.9.0 in main treeDavid Seifert2016-04-104-85/+0
| * sci-biology/tophat: remove all ebuilds, latest version in main treeDavid Seifert2016-04-097-348/+0
| * cluster to fsl_cluster renameHorea Christian2016-04-041-1/+1
| * sci-biology/abyss: moved to main treeDavid Seifert2016-04-0313-367/+0
| * sci-biology/abyss: fix automagic haskell deps, bug #534412Sergei Trofimovich2016-04-032-4/+22
* | sci-biology/repeatmasker: add DEPENDency on dev-perl/Text-Soundex as it now l...Martin Mokrejš2016-04-121-3/+3
* | sci-biology/trinityrnaseq: use 'rm -rf' when deleting a subdirectory with bun...Martin Mokrejš2016-04-113-3/+3
* | sci-biology/trinityrnaseq: adjust to sci-biology/samtools using SLOTs now;Martin Mokrejš2016-04-114-2/+79
* | sci-biology/pysamstats: new packageMartin Mokrejš2016-04-113-0/+36
* | sci-biology/AlignGraph: improve package DESCRMartin Mokrejš2016-04-111-1/+1
* | sci-biology/megahit: new packageMartin Mokrejš2016-04-102-0/+46
* | sci-biology/oases: new packageMartin Mokrejš2016-04-105-0/+102
* | sci-biology/reaper: new packageMartin Mokrejš2016-04-103-0/+47
* | sci-biology/snpomatic: new packageMartin Mokrejš2016-04-102-0/+46
* | sci-biology/somatic-sniper: new packageMartin Mokrejš2016-04-103-0/+42
* | sci-biology/gemini: new packageMartin Mokrejš2016-04-102-0/+41
* | sci-biology/bfast: new packageMartin Mokrejš2016-04-103-0/+33
* | sci-biology/smalt: new packageMartin Mokrejš2016-04-101-2/+2
* | sci-biology/iCORN2: new package with bundled gatk and picard jar filesMartin Mokrejš2016-04-103-0/+71
* | sci-biology/Scaffolder-evaluation: new packageMartin Mokrejš2016-04-102-0/+46
* | sci-biology/Fastaq: new packageMartin Mokrejš2016-04-102-0/+33
* | sci-biology/assembly-stats: new packageMartin Mokrejš2016-04-102-0/+34
* | sci-biology/bamtools: try to document roughly what jsoncpp version is likely ...Martin Mokrejš2016-04-101-0/+1
* | sci-biology/sga: compilation against bamtools does not work, see linkMartin Mokrejš2016-04-101-0/+1
* | sci-biology/sga: move optional runtime deps to RDEPENDMartin Mokrejš2016-04-101-2/+2
* | sci-biology/SPAdes: improve descriptionMartin Mokrejš2016-04-081-1/+1
* | sci-biology/edena: improve package descriptionMartin Mokrejš2016-04-081-1/+1
* | sci-biology/sga: improve package descriptionMartin Mokrejš2016-04-081-2/+2
* | sci-biology/cap3-bin: drop KEYWORDSMartin Mokrejš2016-04-082-2/+2
* | sci-biology/cap3-bin: drop wrong LICENSEMartin Mokrejš2016-04-082-2/+2
* | sci-biology/arachne: improve package descriptionMartin Mokrejš2016-04-081-1/+1
* | sci-biology/arachne: improve package descriptionMartin Mokrejš2016-04-081-1/+1
* | sci-biology/SSAKE: improve package descriptionMartin Mokrejš2016-04-081-1/+1
* | sci-biology/wgs-assembler: improve package descriptionMartin Mokrejš2016-04-081-2/+2
* | sci-biology/sailfish: version bump; noted bundled 3rd-party codeMartin Mokrejš2016-04-083-3/+13
* | sci-biology/prinseq-lite: new package, needs more perl modulesMartin Mokrejš2016-04-033-0/+49
* | sci-biology/MolBioLib: does not build, contacted upstreamMartin Mokrejš2016-04-021-1/+1
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* sci-biology/MolBioLib: yet another package with bundled samtools, bamtools etc.Martin Mokrejš2016-04-013-0/+44
* sci-biology/roche454ace2caf: Drop keywords, Bump to EAPI=6Marius Brehler2016-04-011-3/+3
* sci-biology/gap2caf: Drop keywordsMarius Brehler2016-04-011-2/+2
* sci-biology/staden: Drop keywords since keywords were droped for staden_docMarius Brehler2016-04-011-1/+1
* sci-biology/staden: Fix copyright and dependciesMarius Brehler2016-04-012-4/+4
* sci-biology/bamtools: version bump; still suffers gentoo bug #550144Martin Mokrejš2016-04-013-0/+55
* sci-biology/reapr: quick and dirty Debian patches do not help me with sci-bio...Martin Mokrejš2016-04-013-3/+277
* sci-biology/karect: new packageMartin Mokrejš2016-03-313-0/+46
* sci-biology/cross_genome: polish ebuild syntaxMartin Mokrejš2016-03-301-1/+1
* sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies ar...Martin Mokrejš2016-03-303-17/+32
* sci-biology/arachne: new package; does not compile (upstream contacted) and t...Martin Mokrejš2016-03-303-0/+54