| Commit message (Collapse) | Author | Age | Files | Lines | ||
|---|---|---|---|---|---|---|
| ... | ||||||
| * | | | sci-biology/GAL: new package, needed by trinityrnaseq and maker |   Martin Mokrejš | 2015-12-31 | 5 | -0/+63 | |
| |/ / | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | sci-biology/maker: do install from a top-level directory; there is a file ↵ | Martin Mokrejš | 2015-12-30 | 2 | -0/+6 | |
| | | | | | | | | | | | | | collision with /usr/bin/compare from media-gfx/imagemagick and with /usr/bin/fasta_tool from sci-biology/trinityrnaseq Package-Manager: portage-2.2.26 | |||||
| * | | sci-biology/maker: added openmpi as dependency; define our own ↵ | Martin Mokrejš | 2015-12-30 | 2 | -1/+16 | |
| | | | | | | | | | | | | | src_install(); add einfo message; added dev-perl/forks-shared dependency Package-Manager: portage-2.2.26 | |||||
| * | | sci-biology/maker: added dependency on dev-perl/forks | Martin Mokrejš | 2015-12-30 | 2 | -0/+4 | |
| | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | sci-biology/Atlas2: Drop ruby19, shorten description, add missing dies |   Marius Brehler | 2015-12-25 | 2 | -5/+8 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/Atlas2: Add longdescription | Marius Brehler | 2015-12-25 | 2 | -0/+9 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/scbi_plot: Fix header, remove ruby19 | Marius Brehler | 2015-12-25 | 2 | -2/+5 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/scbi_mapreduce: Fix header, remove ruby19 | Marius Brehler | 2015-12-25 | 2 | -2/+6 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/scbi_fasta: Fix header, remove ruby19 | Marius Brehler | 2015-12-25 | 2 | -2/+6 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/scbi_blast: Fix header, remove ruby19 | Marius Brehler | 2015-12-25 | 2 | -2/+6 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/full_lengther_next: Fix header, remove ruby19 | Marius Brehler | 2015-12-25 | 2 | -2/+6 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/mricron: Fix minorsyn | Marius Brehler | 2015-12-25 | 2 | -1/+3 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/bru2nii: Fix minorsyn | Marius Brehler | 2015-12-25 | 2 | -1/+3 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | sci-biology/TransDecoder: Fix minorsyn, add missing die | Marius Brehler | 2015-12-25 | 2 | -2/+6 | |
| | | | | | | | | | Package-Manager: portage-2.2.24 | |||||
| * | | moved files to new location |   Horea Christian | 2015-12-18 | 5 | -0/+126 | |
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| * | | sci-biology/maker: drop duplicated Module-Build requirement | Martin Mokrejš | 2015-12-18 | 2 | -1/+3 | |
| | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | sci-biology/maker: fix Module-Build dependency | Martin Mokrejš | 2015-12-18 | 2 | -1/+4 | |
| |/ | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/bamtools: Unbundle jsoncpp |   Justin Lecher | 2015-12-13 | 2 | -10/+36 | |
| | | | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | Merge remote-tracking branch 'github/master' | Marius Brehler | 2015-12-07 | 2 | -0/+12 | |
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| | * | sci-biology/mricron: added icon and gnome desktop entry | Horea Christian | 2015-12-06 | 2 | -0/+12 | |
| | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | sci-biology/repeatmasker: actually the the utilities do not include ↵ | Martin Mokrejš | 2015-12-06 | 2 | -3/+8 | |
| | | | | | | | | | | | | | Libraries/ in the paths so install it along all other *.pm files Package-Manager: portage-2.2.26 | |||||
| * | | sci-biology/repeatmasker: fix ebuild so that it installs files in a proper ↵ | Martin Mokrejš | 2015-12-06 | 2 | -3/+13 | |
| |/ | | | | | | location Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/glean: add YAML dependency | Martin Mokrejš | 2015-12-04 | 1 | -1/+1 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/mricron: corrected binary paths | Horea Christian | 2015-12-04 | 2 | -3/+5 | |
| | | | | | Package-Manager: portage-2.2.24 | |||||
| * | sci-biology/mricron: new ebuild | Horea Christian | 2015-12-04 | 3 | -0/+52 | |
| | | | | | Package-Manager: portage-2.2.24 | |||||
| * | sci-biology/pysam: version bump to 0.8.4 |   Ted Tanberry | 2015-12-03 | 3 | -0/+33 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/wcd: Chop DESCRIPTION to 80 chars | Justin Lecher | 2015-12-03 | 1 | -1/+1 | |
| | | | | | | Package-Manager: portage-2.2.25 Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | sci-biology/wcd: Drop bundled precompiled object files | Justin Lecher | 2015-12-03 | 1 | -0/+5 | |
| | | | | | | Package-Manager: portage-2.2.25 Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | sci-biology/wcd: add note on supported MPI implementations | Martin Mokrejš | 2015-12-03 | 2 | -0/+5 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/wcd: also install some documentation, albeit probably old | Martin Mokrejš | 2015-12-03 | 3 | -1/+9 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/wcd: renamed patch files | Martin Mokrejš | 2015-12-02 | 3 | -0/+5 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/wcd: fix S | Martin Mokrejš | 2015-12-02 | 2 | -0/+5 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/scbi_fasta: new package | Martin Mokrejš | 2015-12-02 | 4 | -0/+44 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/scbi_mapreduce: new package | Martin Mokrejš | 2015-12-02 | 4 | -0/+47 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/full_lengther_next: new package | Martin Mokrejš | 2015-12-02 | 4 | -0/+52 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/scbi_blast: new package | Martin Mokrejš | 2015-12-02 | 4 | -0/+46 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/scbi_plot: new package | Martin Mokrejš | 2015-12-02 | 4 | -0/+46 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/maker: add DEPENDency on dev-perl/Module-Build | Martin Mokrejš | 2015-12-01 | 2 | -0/+4 | |
| | | | | | Package-Manager: portage-2.2.26 | |||||
| * | sci-biology/repeatmasker: rename and move the patch file; drop old patch for ↵ | Martin Mokrejš | 2015-12-01 | 3 | -122/+7 | |
| | | | | | | | a previous version Package-Manager: portage-2.2.18 | |||||
| * | sci-biology/repeatmasker: added file checksum; add missing quotes | Martin Mokrejš | 2015-12-01 | 4 | -4/+110 | |
| | | | | | Package-Manager: portage-2.2.18 | |||||
| * | sci-biology/mothur: version bump; update makefile patch, the other patch ↵ | Martin Mokrejš | 2015-12-01 | 5 | -0/+125 | |
| | | | | | | | from 1.27 series seems not necessary anymore; added few more IUSE values but the makefile could ideally respect them before forcing boost and zlib libraries into LIBS Package-Manager: portage-2.2.18 | |||||
| * | sci-biology/repeatmasker: improve einfo message | Martin Mokrejš | 2015-11-24 | 2 | -1/+6 | |
| | | | | | Package-Manager: portage-2.2.18 | |||||
| * | sci-biology/repeatmasker: heavily patch configure to return error codes and ↵ | Martin Mokrejš | 2015-11-24 | 5 | -0/+238 | |
| | | | | | | | die upon error; add more DEPENDencies Package-Manager: portage-2.2.18 | |||||
| * | sci-biology/maker: added DEPENDencies on two new dev-perl/ packages added by ↵ | Martin Mokrejš | 2015-11-24 | 1 | -4/+4 | |
| | | | | | Andreas K. Hüttel to the main portage tree | |||||
| * | Merge branch 'master' of ssh://github.com/gentoo-science/sci |   Christoph Junghans | 2015-11-23 | 1 | -1/+1 | |
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| | * | Merge pull request #539 from TheChymera/patch-1 | Justin Lecher | 2015-11-23 | 1 | -1/+1 | |
| | |\ | | | | | | | typo | |||||
| | | * | typo | Horea Christian | 2015-11-21 | 1 | -1/+1 | |
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| * | | | sci-biology/ncbi-blast+-2.2.31: version bump, seems that some parts of the ↵ | Martin Mokrejš | 2015-11-22 | 5 | -1/+368 | |
| |/ / | | | | | | | | | | | ncbi-blast+-2.2.30__fix_lib_deps.patch could/should be re-used Package-Manager: portage-2.2.18 | |||||
| * | | sci-biology/trinityrnaseq: version bump but dropping KEYWORDS because we ↵ | Martin Mokrejš | 2015-11-21 | 4 | -0/+105 | |
| | | | | | | | | | | | | | relocate *.pm file into vendor_perl and all 'use blah' calls to trinity-provided perl modules need to be changed to 'use trinityrnaseq::blah', or PERL5INC modified? Package-Manager: portage-2.2.18 | |||||
| * | | sci-biology/parafly: document a recent upstream bugreport from github | Martin Mokrejš | 2015-11-21 | 2 | -0/+6 | |
| | | | | | | | | | Package-Manager: portage-2.2.18 | |||||
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