| Commit message (Expand) | Author | Age | Files | Lines |
* | sci-biology/ncbi-tools++: added a note about a taxonomy database add-on not y... | Martin Mokrejš | 2014-06-02 | 3 | -0/+12 |
* | Add new ebuild | Alexey Shvetsov | 2014-06-02 | 4 | -0/+54 |
* | sci-biology/cd-hit-auxtools: added HTML manual page | Martin Mokrejš | 2014-06-01 | 3 | -1/+8 |
* | sci-biology/cd-hit-auxtools: new package, needs gcc<=4.6.4 or some CXXFLAG to... | Martin Mokrejš | 2014-06-01 | 5 | -0/+109 |
* | sci-biology/cd-hit-4.6.1: forgot to re-enable the reworked patch | Martin Mokrejš | 2014-06-01 | 2 | -1/+4 |
* | sci-biology/cd-hit-4.6.1: version bump | Martin Mokrejš | 2014-06-01 | 5 | -0/+195 |
* | sci-biology/bedtools-2.20.1: version bump | Martin Mokrejš | 2014-05-30 | 3 | -1/+7 |
* | sci-biology/khmer: Version BUmp | Justin Lecher | 2014-05-15 | 4 | -1/+71 |
* | Imported to tree | Justin Lecher | 2014-05-07 | 10 | -304/+0 |
* | Configure works | Justin Lecher | 2014-05-06 | 1 | -8/+8 |
* | sci-biology/trf-4.07b: version bump; install some HTML helpfiles as well | Martin Mokrejš | 2014-04-22 | 4 | -0/+61 |
* | sci-biology/mira-4.0.2: version bump | Martin Mokrejš | 2014-04-20 | 2 | -1/+1 |
* | sci-biology/biopython: ops, taking back my own testing patches | Martin Mokrejš | 2014-04-18 | 3 | -224/+4 |
* | sci-biology/biopython: upstream patch to downgrade an assert to a warning | Martin Mokrejš | 2014-04-18 | 8 | -1/+371 |
* | sci-biology/bedtools: version bump per bug #505538 | Martin Mokrejš | 2014-04-15 | 4 | -0/+59 |
* | sci-biology/VelvetOptimiser: add requirement for threaded perl | Martin Mokrejš | 2014-04-15 | 2 | -1/+5 |
* | sci-biology/VelvetOptimiser: new package | Martin Mokrejš | 2014-04-15 | 4 | -0/+48 |
* | sci-biology/velvetk: new package | Martin Mokrejš | 2014-04-15 | 4 | -0/+48 |
* | sci-biology/nesoni: new package, needs some dev-lang/R -based packages to be ... | Martin Mokrejš | 2014-04-15 | 4 | -0/+53 |
* | sci-biology/barrnap: new package, package contains bundled binaries, untested | Martin Mokrejš | 2014-04-15 | 4 | -0/+41 |
* | sci-biology/mira-4.0.1: bump to current recommended bugfix release | Martin Mokrejš | 2014-04-12 | 3 | -0/+82 |
* | sci-biology/consed: add a stub file for consedrc; refer to it via CONSED_PARA... | Martin Mokrejš | 2014-04-05 | 9 | -0/+30 |
* | sci-biology/consed: fix more hardcoded paths | Martin Mokrejš | 2014-04-05 | 9 | -8/+29 |
* | sci-biology/consed: replace hardcoded CONSED_HOME path in installed perl scri... | Martin Mokrejš | 2014-04-02 | 9 | -1/+14 |
* | sci-biology/khmer: upstream dropped the bundled zlib/bzip2 use if it is avail... | Martin Mokrejš | 2014-03-31 | 2 | -18/+22 |
* | sci-biology/YASRA: version bump to a version without compile errors when gcc-... | Martin Mokrejš | 2014-03-31 | 3 | -3/+9 |
* | sci-biology/RADtools: new package | Martin Mokrejš | 2014-03-31 | 5 | -0/+95 |
* | sci-biology/tablet: skeleton for a new package eventually to replace current ... | Martin Mokrejš | 2014-03-31 | 6 | -0/+224 |
* | sci-biology/stacks: skeleton for a new package; needs webapp team help, *some... | Martin Mokrejš | 2014-03-31 | 4 | -0/+69 |
* | sci-biology/biopieces: skeleton for a new package; has it's own install.sh sc... | Martin Mokrejš | 2014-03-31 | 5 | -0/+147 |
* | sci-biology/scan_for_matches: new package, LICENSE not explicitly avalaible h... | Martin Mokrejš | 2014-03-31 | 4 | -0/+46 |
* | sci-biology/ncbi-tools++: add deps on jpeg-turbo | Martin Mokrejš | 2014-03-25 | 1 | -1/+1 |
* | sci-biology/cutadapt: switch to use newer source code location, add support f... | Martin Mokrejš | 2014-03-25 | 4 | -2/+60 |
* | sci-biology/khmer: Also drop sphinx as build requirement | Justin Lecher | 2014-03-24 | 3 | -0/+6 |
* | sci-biology/staden: fix ESVN_REPO_URI to include trailing 'src/' so that we d... | Martin Mokrejš | 2014-03-24 | 2 | -4/+5 |
* | sci-biology/ngs_backbone: added an ebuild for latest release | Martin Mokrejš | 2014-03-24 | 5 | -0/+179 |
* | sci-biology/mgblast: initial ebuild but while it needs an old version of ncbi... | Martin Mokrejš | 2014-03-24 | 4 | -0/+67 |
* | sci-biology/BamView: dropped KEYWORDS | Martin Mokrejš | 2014-03-24 | 2 | -1/+5 |
* | sci-biology/BamView: not sure if we need a separate package; is said to be pa... | Martin Mokrejš | 2014-03-24 | 3 | -0/+31 |
* | sci-biology/mapview-bin: new package, missing LICENSE, upstream website is down | Martin Mokrejš | 2014-03-24 | 4 | -0/+51 |
* | sci-biology/emboss-6.3.1_p4-r2: added plplot dependency, trying to get rid of... | Martin Mokrejš | 2014-03-24 | 2 | -4/+14 |
* | sci-biology/freebayes: a new package skeleton; need to retrive from git in a ... | Martin Mokrejš | 2014-03-24 | 3 | -0/+49 |
* | sci-biology/pileup: dropped KEYWORDS due to misisng LICENSE | Martin Mokrejš | 2014-03-24 | 2 | -2/+6 |
* | sci-biology/pileup: new package; a pileup pipeline used along SSAHA2 | Martin Mokrejš | 2014-03-24 | 4 | -0/+86 |
* | sci-biology/sga: new package; forces its own optimization flags but works fine | Martin Mokrejš | 2014-03-24 | 3 | -0/+66 |
* | sci-biology/ngsview: new package skeleton, needs qt team help | Martin Mokrejš | 2014-03-24 | 4 | -0/+47 |
* | sci-biology/scythe: new package, bundled Makefile forces -O3, wrong version n... | Martin Mokrejš | 2014-03-24 | 3 | -0/+45 |
* | sci-biology/sickle: new package | Martin Mokrejš | 2014-03-24 | 3 | -0/+45 |
* | API bumped, whitespace removal | Martin Mokrejš | 2014-03-24 | 2 | -2/+5 |
* | added some dev-java dependencies and removed some bundled .jar files | Martin Mokrejš | 2014-03-24 | 2 | -1/+68 |