Commit message (Collapse) | Author | Age | Files | Lines | |
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* | Revert "Gentoo does https by default now" | Justin Lecher | 2015-06-21 | 246 | -246/+246 |
| | | | | This reverts commit 98718494343af4990facdefb0033471686e975a6. | ||||
* | Gentoo does https by default now | Justin Lecher | 2015-06-21 | 246 | -246/+246 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | Merge branch 'master' of github.com:gentoo-science/sci | Andrei Zavada | 2015-06-17 | 595 | -6555/+8966 |
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| * | sci-biology/tgicl: Fix dependency problems due to recent mask of perl-core ↵ | Justin Lecher | 2015-06-15 | 2 | -4/+7 |
| | | | | | | | | | | | | packages Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/swissknife: Fix dependency problems due to recent mask of ↵ | Justin Lecher | 2015-06-15 | 2 | -4/+7 |
| | | | | | | | | | | | | perl-core packages Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/manatee-igs: Fix dependency problems due to recent mask of ↵ | Justin Lecher | 2015-06-15 | 2 | -34/+38 |
| | | | | | | | | | | | | perl-core packages Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/glean: Fix dependency problems due to recent mask of perl-core ↵ | Justin Lecher | 2015-06-15 | 2 | -1/+5 |
| | | | | | | | | | | | | packages Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/ncbi-tools++: added upstream patch to compile against ↵ | Martin Mokrejš | 2015-06-11 | 3 | -0/+120 |
| | | | | | | | | | | | | sys-libs/db-6.0.30 Package-Manager: portage-2.2.18 | ||||
| * | more comments on the external dependencies | Martin Mokrejš | 2015-06-10 | 2 | -2/+17 |
| | | | | | | | | Package-Manager: portage-2.2.18 | ||||
| * | add dependency on jhdf5; more ebuild cleanup | Martin Mokrejš | 2015-06-10 | 2 | -3/+8 |
| | | | | | | | | Package-Manager: portage-2.2.18 | ||||
| * | sci-biology/artemis: ebuild cleanup; officially there is not install and one ↵ | Martin Mokrejš | 2015-06-09 | 3 | -5/+39 |
| | | | | | | | | | | | | needs to keep the structure of the source tree and execute directly from there; therefore the ebuild does not work yet Package-Manager: portage-2.2.18 | ||||
| * | sci-biology/artemis-bin: ebuild cleanup | Martin Mokrejš | 2015-06-09 | 2 | -8/+23 |
| | | | | | | | | Package-Manager: portage-2.2.18 | ||||
| * | sci-biology/samtools: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/ngsview: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -1/+4 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/perlprimer: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -2/+7 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/bowtie: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/ngsview: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/mrsfast: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -2/+7 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/mrfast: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -2/+7 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/mira: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/codonw: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/bx-python: Add bitbucket to remote-id in metadata.xml | Justin Lecher | 2015-06-07 | 2 | -0/+4 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/Trinotate: Fix whitespaces | Justin Lecher | 2015-06-06 | 2 | -2/+5 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/Trinotate: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/trinityrnaseq: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/TransDecoder: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -1/+7 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/pybedtools: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/metaseq: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/igv: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/gffutils: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/bedtools: Bump to EAPI=5 | Justin Lecher | 2015-06-06 | 2 | -1/+4 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/ffindex: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/fastx_toolkit: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -1/+7 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/bedtools: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+4 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/bcftools: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-06 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/mira: version bump, note that >=gcc-4.9.1 is needed since 4.9.x | Martin Mokrejš | 2015-06-05 | 6 | -0/+256 |
| | | | | | | | | Package-Manager: portage-2.2.18 | ||||
| * | sci-biology/sickle: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/sga: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -4/+9 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/scythe: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -2/+7 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/screed: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -1/+5 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/rum: Use perl virtuals, add missing die; use PN for tarball | Justin Lecher | 2015-06-05 | 3 | -9/+10 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/salmon: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/sabre: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/rum: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/minced: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/lighter: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/khmer: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -1/+5 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/InterMine: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -1/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/freebayes: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/exonerate-gff3: Add github to remote-id in metadata.xml | Justin Lecher | 2015-06-05 | 2 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.20 |