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* sci-libs/pytorch: update to 1.10.2Miezhiko2022-02-242-1/+1
| | | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Closes: https://github.com/gentoo/sci/pull/1145 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/spyking-circus: bump to 1.1.0Andrew Ammerlaan2022-01-312-8/+5
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/clfft: remove underscore from use flagAndrew Ammerlaan2022-01-263-9/+9
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pg2plplot: bump to 5.13.1Andrew Ammerlaan2022-01-252-11/+12
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libsufr: bump to 0.7.7Andrew Ammerlaan2022-01-252-5/+4
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/aocl-libm: bump to 3.1.0Andrew Ammerlaan2022-01-252-15/+12
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libflame-amd: bump to 3.1Andrew Ammerlaan2022-01-252-19/+10
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libflame-amd: drop liveAndrew Ammerlaan2022-01-251-55/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/iRODS: bump to 4.2.11Andrew Ammerlaan2022-01-243-21/+78
| | | | | | | Finally the configure phase passes Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/rdkit: bump to 2021.09.4Andrew Ammerlaan2022-01-245-120/+81
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/jhdf5: remove old java packageAndrew Ammerlaan2022-01-233-50/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: revbump as per previous commitHorea Christian2022-01-181-0/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pytorch: removed deprecated sys-fabric/libibverbs depHorea Christian2022-01-181-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pydicom: update to 2.2.2, py3.10 supportMiezhiko2022-01-182-0/+28
| | | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Miezhiko <Miezhiko@gmail.com> Closes: https://github.com/gentoo/sci/pull/1139 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/mlpack: fix pytest-runner errorAndrew Ammerlaan2022-01-151-4/+10
| | | | | | Closes: https://github.com/gentoo/sci/issues/1086 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* Fixed thrust include path for rocm platformAntonin Riha2022-01-141-0/+1
| | | | | | Signed-off-by: Antonín Říha <riha.antonin@outlook.com> Closes: https://github.com/gentoo/sci/pull/1133 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: cleanup oldAndrew Ammerlaan2022-01-125-957/+0
| | | | | | | | | | | | we finally have a working version of this again Closes: https://github.com/gentoo/sci/issues/1075 Closes: https://github.com/gentoo/sci/issues/1073 Closes: https://github.com/gentoo/sci/issues/1070 Closes: https://github.com/gentoo/sci/issues/953 Closes: https://bugs.gentoo.org/789807 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/itk: fixed missing limits issue for newer GCCHorea Christian2022-01-094-12/+23
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pytorch: fixes for cuda USE flag, nccl updateMiezhiko2021-12-273-3/+42
| | | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Closes: https://github.com/gentoo/sci/pull/1132 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: fix dep on pytorchAndrew Ammerlaan2021-12-261-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --force Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: use python-single-r1Andrew Ammerlaan2021-12-261-2/+7
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --force Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: use python-single-r1Andrew Ammerlaan2021-12-261-2/+9
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: new packageAndrew Ammerlaan2021-12-263-0/+57
| | | | | | | Closes: https://github.com/gentoo/sci/issues/943 Closes: https://github.com/gentoo/sci/pull/944 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: add clhpp patch, fix setuptools depAndrew Ammerlaan2021-12-262-3/+57
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: fix python build with >=setuptools-59.6YiyangWu2021-12-262-0/+94
| | | | | | | | | Reference: https://github.com/pytorch/pytorch/commit/07767569c964552702bf374da753212eb9cde327 Reference: https://github.com/gentoo/sci/pull/1123#issuecomment-999597677 Package-Manager: Portage-3.0.22, Repoman-3.0.3 Closes: https://github.com/gentoo/sci/pull/1130 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/pytorch: QA fixesAndrew Ammerlaan2021-12-221-21/+10
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: fix python and update rocm supportYiyangWu2021-12-223-18/+74
| | | | | | | | | | | | | | | | | Other changes: 1. Pytorch seems to be work fine with different version of protobuf, so no need to specify 0/30; however when protobuf version changed torch should be rebuilt. 2. BUILD_NAMEDTENSOR is not an option now 3. Verbose mode for rm in src_install Package-Manager: Portage-3.0.22, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Closes: https://github.com/gentoo/sci/pull/1123 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: fix src_install (2)Miezhiko2021-12-221-1/+0
| | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: fix src_installMiezhiko2021-12-221-2/+0
| | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: fix breakpad, drop ~x86 supportMiezhiko2021-12-222-4/+4
| | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* Update pytorch to 1.10.1 improve ebuild quality + switch to EAPI 8Miezhiko2021-12-222-16/+18
| | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: use system pybind11Miezhiko2021-12-222-6/+1
| | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pythorch: solve conflict with system pybind11Miezhiko2021-12-221-1/+3
| | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: add PyTorch 1.10Miezhiko2021-12-223-0/+351
| | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/xblas: fix IndirectInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/xblas: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/vxl: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/wannier90: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/superlu_dist: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/simpleitk: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/nipy: drop UnusedInheritsAndrew Ammerlaan2021-12-162-2/+2
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/mlpack: drop UnusedInheritsAndrew Ammerlaan2021-12-162-2/+2
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/lwpr: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libmaus2: drop UnusedInheritsAndrew Ammerlaan2021-12-161-3/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libflame-amd: drop UnusedInheritsAndrew Ammerlaan2021-12-162-2/+2
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/lib2bit: drop UnusedInheritsAndrew Ammerlaan2021-12-161-6/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/itk: drop UnusedInheritsAndrew Ammerlaan2021-12-162-2/+2
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/fgsl: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/fdlibm: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/fast5: drop UnusedInheritsAndrew Ammerlaan2021-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>