blob: 1e7e6cecac6bc99159addcbdc088db6abfd4791b (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
# this is https://metacpan.org/pod/Bio::DB::HTS and https://github.com/Ensembl/Bio-DB-HTS
# this is not https://metacpan.org/pod/Bio::HTS
MODULE_AUTHOR="RISHIDEV"
inherit perl-module multilib toolchain-funcs
DESCRIPTION="Enable rapid access to bgzipped FASTA files"
#LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
RDEPEND=""
DEPEND="${RDEPEND}
dev-perl/Module-Build
sci-libs/htslib[static-libs]"
SRC_TEST="do"
src_prepare(){
# https://github.com/Ensembl/Bio-HTS/issues/30
export HTSLIB_LIBDIR="${EPREFIX}"/"$(get_libdir)" # currently ignored
export HTSLIB_INCDIR="${EPREFIX}"/usr/include/htslib # currently ignored
export HTSLIB_DIR="${EPREFIX}"/usr # useless, Build.PL will not invent /usr/lib64/ is the correct answer
perl-module_src_prepare
}
# is the below -rpath acceptable?
# x86_64-pc-linux-gnu-gcc -shared -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -Wl,-O1 -Wl,--as-needed -o blib/arch/auto/Bio/DB/HTS/HTS.so lib/Bio/DB/HTS.o -L/usr/lib -Wl,-rpath,/usr/lib -lhts -lpthread -lz
# x86_64-pc-linux-gnu-gcc -shared -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -Wl,-O1 -Wl,--as-needed -o blib/arch/auto/Bio/DB/HTS/Faidx/Faidx.so lib/Bio/DB/HTS/Faidx.o -L/usr/lib -Wl,-rpath,/usr/lib -lhts -lpthread -lz
|
GitWeb
