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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit perl-module
DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS"
# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf
HOMEPAGE="https://github.com/Gaius-Augustus/BRAKER
http://bioinf.uni-greifswald.de/bioinf/braker
http://bioinf.uni-greifswald.de/augustus/downloads"
SRC_URI="https://github.com/Gaius-Augustus/BRAKER/archive/v${PV}.tar.gz -> ${P}.tar.gz"
# Example data for testing the BRAKER2 pipeline is available at
# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER2examples.tar.gz (1.1 GB).
# BRAKER2 is using the Artistic-1.0 version without clause 8 about
# commercial distribution
# See discussion at https://opensource.org/licenses/artistic-license-1.0
# Practically the license is same as http://dev.perl.org/licenses/artistic.html
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
DEPEND=""
RDEPEND="${DEPEND}
dev-perl/Scalar-Util-Numeric
sci-biology/augustus"
#>=sci-biology/GeneMark_ET-bin-4.29"
src_install(){
perl_set_version
dobin scripts/*.pl
perl_domodule scripts/*.pm
dodoc docs/userguide.pdf
}
pkg_postinst(){
einfo "Please install sci-biology/GeneMark_ET after obtaininig a license and binaries from"
einfo "http://exon.gatech.edu/GeneMark/gmes_instructions.html"
}
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