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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
inherit perl-module
DESCRIPTION="Error corrector for Roche/454 and IonTorrent data with indel and carryforward, SNP and haplotype calling"
HOMEPAGE="http://indra.mullins.microbiol.washington.edu/ICC"
SRC_URI="http://indra.mullins.microbiol.washington.edu/cgi-bin/ICC/info.cgi?ID=ICC_v2.0.1.zip -> ICC_v2.0.1.zip"
LICENSE=""
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="dev-lang/perl
sci-biology/ncbi-tools++"
RDEPEND="${DEPEND}"
S="${WORKDIR}"
src_install(){
dobin Scripts/*.pl
dodoc README.txt
# BUG: does not work
cd Scripts/lib || die
perl-module_src_install DESTDIR="${D}" *.pm Parallel/ForkManager.pm # install into @INC path
}
# testing: Blast/Linux/LICENSE OK
# testing: Example/exampleReads.fas OK
# testing: Example/exampleReads.qual OK
# testing: Example/exampleReference.fas OK
# testing: README.md OK
# testing: README.txt OK
# testing: Scripts/ OK
# testing: Scripts/CC.pl OK
# testing: Scripts/HIC.pl OK
# testing: Scripts/IC.pl OK
# testing: Scripts/alignRegion.pl OK
# testing: Scripts/config.pl OK
# testing: Scripts/lib/ OK
# testing: Scripts/lib/.DS_Store OK
# testing: Scripts/lib/Parallel/ OK
# testing: Scripts/lib/Parallel/ForkManager.pm OK
# testing: Scripts/lib/paths.pm OK
# testing: Scripts/lib/seqAlign.pm OK
# testing: Scripts/lib/utils.pm OK
# testing: Scripts/ntFreq.pl OK
# testing: Scripts/readQualFilter.pl OK
# testing: Scripts/retrieveRegion.pl OK
# testing: Scripts/retrieveWindows.pl OK
# testing: Scripts/runBLAST.pl OK
# testing: Scripts/runICC.pl OK
# testing: Scripts/uniqueReads.pl OK
# testing: VersionHistory.txt OK
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