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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads"
HOMEPAGE="https://github.com/bcgsc/LINKS"
SRC_URI="https://github.com/bcgsc/LINKS/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS=""
RESTRICT="test"
RDEPEND="
>=dev-lang/perl-1.6
dev-lang/swig
dev-util/cppcheck
"
# sci-biology/btl_bloomfilter
src_compile(){
cd btllib | die "Cannot chdir to bundled btllib/"
./compile-wrappers || die "Failed to compile bundled btllib"
# baah, this also does some kind of install
# SUCCESS: sdsl was installed successfully!
# The sdsl include files are located in $foo'/LINKS/btllib/external/sdsl-lite/installdir/include'.
# The library files are located in $foo'/LINKS/btllib/external/sdsl-lite/installdir/lib'.
#
# Sample programs can be found in the examples-directory.
# A program 'example.cpp' can be compiled with the command:
# g++ -std=c++11 -DNDEBUG -O3 [-msse4.2] \
# -I$foo/LINKS/btllib/external/sdsl-lite/installdir/include -L$foo/LINKS/btllib/external/sdsl-lite/installdir/lib \
# example.cpp -lsdsl -ldivsufsort -ldivsufsort64
#
# Tests in the test-directory
# A cheat sheet in the extras/cheatsheet-directory.
# Have fun!
# [2/3] Installing files.
# Installing extras/python/_btllib.so to $foo/LINKS/btllib/python
# Installing $foo/LINKS/btllib/extras/python/btllib.py to $foo/LINKS/btllib/python
}
src_install(){
sed -e 's#$(bin)/../src/##' -i bin/LINKS-make || die
sed -e 's#perl $(bin)/##' -i bin/LINKS-make || die
dobin bin/LINKS bin/LINKS-make src/LINKS_CPP bin/*.pl tools/*.pl
dodoc README.md
}
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