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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
DESCRIPTION="de Bruijn and OLC assembler for Sanger, Roche 454, Illumina, Pacbio, Nanopore"
HOMEPAGE="http://www.genome.umd.edu/masurca.html
http://bioinformatics.oxfordjournals.org/content/29/21/2669
http://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf"
SRC_URI="${P}.tar.gz
ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA_QuickStartGuide.pdf"
LICENSE="BSD GPL-2 GPL-3"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND=">=dev-lang/perl-5.8
app-arch/bzip2"
RDEPEND="${DEPEND}"
RESTRICT="fetch"
src_configure(){
./install.sh || die
}
src_compile(){
./install.sh || die
}
src_install(){
dobin masurca
dodoc sr_config_example.txt
}
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