sci-biology/MolBioLib/MolBioLib-5.ebuild


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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=7

DOCS_BUILDER="doxygen"
DOCS_DEPEND="media-gfx/graphviz"

inherit docs

DESCRIPTION="C++11 framework for bioinformatics tasks"
HOMEPAGE="https://sourceforge.net/projects/molbiolib"
SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.version${PV}.tar.gz"

LICENSE="GPL-3"
SLOT="0"
KEYWORDS="" # does not build

# contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62)
# which contains jsoncpp, also needs app-doc/doxygen
DEPEND="
	dev-lang/perl
	sys-devel/gcc:*
	sys-devel/clang:*
	>=sci-biology/samtools-0.1.18:0.1-legacy
	<sci-biology/samtools-1:0.1-legacy"
RDEPEND="${DEPEND}"
CDEPEND="doc? ( app-doc/doxygen )"

S="${WORKDIR}"/MolBioLib

src_compile(){
	perl MakeAllApps.pl || die
	docs_compile
}

src_install() {
	einstalldocs
	# TODO: install this
}