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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_6 )
inherit distutils-r1
DESCRIPTION="Utilities for RNA-seq data quality control"
HOMEPAGE="https://rseqc.sourceforge.net"
SRC_URI="https://sourceforge.net/projects/rseqc/files/RSeQC-2.6.1.tar.gz
https://sourceforge.net/projects/rseqc/files/other/fetchChromSizes"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND=">=sci-biology/pysam-0.7.5[${PYTHON_USEDEP}]"
RDEPEND="${DEPEND}"
# pysam (v0.7.5) was built in RSeQC. The latest version of pysam may not be compatible with RSeQC.
python_install(){
distutils-r1_python_install
rm -r "${D}$(python_get_sitedir)"/pysam
dobin "${DISTDIR}"/fetchChromSizes
}
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