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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
DESCRIPTION="Error corrector for RNA-Seq reads"
HOMEPAGE="http://sb.cs.cmu.edu/seecer/"
SRC_URI="
http://sb.cs.cmu.edu/seecer/downloads/SEECER-0.1.3.tar.gz
http://sb.cs.cmu.edu/seecer/downloads/manual.pdf"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="
sci-libs/gsl
sci-biology/seqan
sci-biology/jellyfish"
RDEPEND="${DEPEND}"
S="${S}"/SEECER
# doh, it install /usr/bin/seecer (note the lowercase letters)
# checking for x86_64-pc-linux-gnu-gcc option to support OpenMP... -fopenmp
#
# Uses:
# libgomp.so.1 => /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/libgomp.so.1 (0x00007f7853faf000)
# dobin bin/run_seecer.sh
# dodoc "${DISTDIR}"/manual.pdf
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