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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
PYTHON_COMPAT=( python{2_7,3_{4,5}} )
inherit eutils toolchain-funcs
DESCRIPTION="De novo de Bruijn genome assembler (bacteria to fungi) or uneven coverage"
HOMEPAGE="http://bioinf.spbau.ru/en/spades"
SRC_URI="
http://spades.bioinf.spbau.ru/release${PV}/SPAdes-${PV}.tar.gz
http://spades.bioinf.spbau.ru/release${PV}/manual.html -> ${P}_manual.html
http://spades.bioinf.spbau.ru/release3.9.1/dipspades_manual.html -> ${P}_dipspades_manual.html
http://spades.bioinf.spbau.ru/release3.9.1/rnaspades_manual.html -> ${P}_rnaspades_manual.html
http://spades.bioinf.spbau.ru/release3.9.1/truspades_manual.html -> ${P}_truspades_manual.html"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND="
sys-libs/zlib
app-arch/bzip2
dev-python/regex
dev-libs/boost"
RDEPEND="${DEPEND}"
pkg_pretend() {
if [[ ${MERGE_TYPE} != binary ]]; then
if [[ $(tc-getCXX) == *g++ ]] ; then
if [[ $(gcc-major-version) == 4 && $(gcc-minor-version) -lt 7 || $(gcc-major-version) -lt 4 ]] ; then
eerror "You need at least sys-devel/gcc-4.7.0"
die "You need at least sys-devel/gcc-4.7.0"
fi
fi
fi
}
#src_compile(){
# # grr, it actually also installs the files into $DESTDIR but that is purged before pkg_qmerge starts
# PREFIX="${D}"/usr ./spades_compile.sh || die
#}
src_install(){
PREFIX="${ED}"/usr ./spades_compile.sh || die
insinto /usr/share/"${PN}"
dodoc "${DISTDIR}"/${P}_*manual.html
}
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