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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
inherit java-pkg-2
DESCRIPTION="Variant detection (germline, multi-sample, somatic mut., som. cp nr alterations (CNA)), SNP calls"
HOMEPAGE="http://varscan.sourceforge.net/"
# binary
#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar
#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar"
SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.source.jar"
LICENSE="Non-profit-OSL-3.0"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="
>=virtual/jdk-1.5:*"
RDEPEND=">=virtual/jre-1.5:*"
S="${WORKDIR}"/net/sf/varscan
src_compile(){
javac *.java
}
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