blob: debf770c012fefac2e6ec161c90aae059b2adedf (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
|
# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
inherit java-pkg-2
DESCRIPTION="DNA contig sequence comparison tool supplementing Artemis"
HOMEPAGE="http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act"
SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/sact_v13.jar
ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_v13.jar
ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_manual_complete.pdf -> ${P}.manual.pdf
ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_html_build.zip -> ${P}.html_build.zip"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND="
!sci-biology/artemis"
RDEPEND="${DEPEND}
>=virtual/jre-1.6:*"
S="${WORKDIR}"
src_unpack(){
unzip "${DISTDIR}"/${P}.html_build.zip || die
}
src_prepare(){
default
cd act_html_build || die
rm -f .DS_Store HTML.index HTML.manifest || die
}
src_install(){
java-pkg_dojar "${DISTDIR}"/*.jar
dodoc "${DISTDIR}"/${P}.manual.pdf
insinto /usr/share/doc/"${PN}"/html
doins act_html_build/*
}
pkg_postinst(){
einfo "For BAM file support please install sci-biology/BamView"
einfo "You may find interesting the additional web resources:"
einfo "http://www.webact.org/WebACT"
einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html"
}
|
GitWeb
