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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
inherit java-pkg-2 java-ant-2 git-r3
DESCRIPTION="DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool"
HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis"
SRC_URI=""
EGIT_REPO_URI="https://github.com/sanger-pathogens/Artemis"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS=""
IUSE=""
# uses its own BamView
DEPEND="
sci-biology/samtools
>=virtual/jdk-1.6
dev-java/ant-core"
RDEPEND="${DEPEND}
>=virtual/jre-1.6"
# http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00551.html
# http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00561.html
# http://gmod.org/wiki/Artemis-Chado_Integration_Tutorial
# ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf
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