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--- Makefile 2009-11-23 23:29:24.000000000 +0100
+++ /tmp/Makefile 2010-12-05 15:06:53.000000000 +0100
@@ -3,7 +3,7 @@
# $Id: Makefile,v 1.2 2009/11/23 22:29:24 mschatz Exp $
-INSTALL_DIR = /usr/local/bin
+INSTALL_DIR = $(DESTDIR)/bin
PROG_NAME = autoEditor
all: $(PROG_NAME)
@@ -56,10 +56,9 @@
RAWCOBJS = $(SRCS:.c=.o)
OBJS = $(RAWCOBJS:.cc=.o)
-TF_ROOT = TigrFoundation-2.0
LIBSLICE = libSlice-1.0
-IOLIB = ${PWD}/io_lib-1.8.11/install
+IOLIB = /usr
IO_LIB_INC = $(IOLIB)/include/io_lib
IO_LIB_LIB = $(IOLIB)/lib
@@ -68,8 +67,6 @@
DEFINES = -DUSE_ZLIB -DUSE_CPP_FRONTEND
-DEBUG = -O2 -g
-
LFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
ifeq ($(HOSTTYPE), alpha)
@@ -96,32 +93,12 @@
endif
CFLAGS = -Wall $(DEBUG) $(DEFINES) $(INC) ${LFS}
-CPPFLAGS = $(CFLAGS) -I$(TF_ROOT) -L$(TF_ROOT) -D_HAS_GETOPT
-LDLIBS = -lSlice -lTigrFoundation -lm -lread -lz
-
+CPPFLAGS = $(CFLAGS) -D_HAS_GETOPT
+LDLIBS = -lSlice -lTigrFoundation -lm -lstaden-read -lz
-${IOLIB}/lib/libread.la:
- cd io_lib-1.8.11; \
- rm -Rf ${IOLIB}; \
- if [ -e Makefile ] ; then make distclean; fi; \
- ./configure --prefix=${IOLIB}; \
- make; \
- make install; \
- cp os.h ${IOLIB}/include/io_lib; \
- cp config.h ${IOLIB}/include/io_lib; \
- if [ -e ${IOLIB}/lib/libread.so ]; \
- then mv ${IOLIB}/lib/libread.so ${IOLIB}/lib/libread-so.so; \
- fi;
libSlice-1.0/libSlice.a:
cd libSlice-1.0; \
- CXXFLAGS="-I../TigrFoundation-2.0 -L../TigrFoundation-2.0" \
- CC=$(CC) \
- CXX=$(CXX) \
- make;
-
-TigrFoundation-2.0/libTigrFoundation.a:
- cd TigrFoundation-2.0; \
CC=$(CC) \
CXX=$(CXX) \
make;
@@ -129,9 +106,7 @@
# Rule for linking all of the objects into the program
-$(PROG_NAME): ${IOLIB}/lib/libread.la \
- TigrFoundation-2.0/libTigrFoundation.a \
- libSlice-1.0/libSlice.a \
+$(PROG_NAME): libSlice-1.0/libSlice.a \
$(OBJS)
$(CXX) $(CPPFLAGS) -o $@ $(OBJS) $(LDLIBS); \
echo; \
@@ -144,18 +119,13 @@
cd libSlice-1.0; \
make clean; \
cd ..; \
- cd TigrFoundation-2.0; \
- make clean; \
- cd ..; \
- cd io_lib-1.8.11; \
- rm -Rf install; \
- if [ -e Makefile ]; then make distclean; fi;
sample: ${PROG_NAME}
./${PROG_NAME} -v -c sample/29713/chromo sample/29713/29713
install: ${PROG_NAME}
- cp ${PROG_NAME} ${INSTALL_DIR}
+ mkdir -p $(DESTDIR)/bin || exit
+ cp ${PROG_NAME} $(DESTDIR)/bin/
uninstall:
- rm ${INSTALL_DIR}/${PROG_NAME}
+ rm ${DESTDIR}/${PROG_NAME}
|
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