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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
HOMEPAGE="http://www.htslib.org/bcftools_release_notes"
SRC_URI="http://sourceforge.net/projects/samtools/files/samtools/1.1/bcftools-1.1.tar.bz2"
LICENSE="MIT-GRL"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND="sci-libs/htslib
dev-lang/perl"
RDEPEND="${DEPEND}"
src_prepare(){
sed -e 's#prefix = /usr/local#prefix = /usr#' \
-e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i Makefile
sed -e 's#prefix = /usr/local#prefix = /usr#' \
-e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i htslib-1.1/Makefile
}
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