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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
DESCRIPTION="Error corrector for Illummina and Roche/454 able to also fix insertions and deletions"
HOMEPAGE="http://www.csiro.au/Outcomes/ICT-and-Services/Software/Blue.aspx"
SRC_URI="
http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Linux112.ashx -> ${P}.tar.gz
http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Correcting_reads_with_Blue.ashx -> Correcting_reads_with_Blue.pdf"
LICENSE="GPL-2+"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="dev-lang/mono"
RDEPEND="${DEPEND}"
S="${WORKDIR}"/Linux
src_compile(){
Blue/compile.sh || die
Tessel/compile.sh || die
GenerateMerPairs/compile.sh || die
}
src_install(){
dobin Tessel.exe GenerateMerPairs.exe Blue.exe
# one could install also the *.exe.so files for speedup into /usr/bin/
}
# it's author uses 'mono-sgen /usr/bin/Blue.exe' to use the alternative garbage collector
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