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Description: Change class name of _Context_LSS
New version 1.4 of SeQan uses a different name of the class.
Forwarded: no
Author: Gert Wollny <gw.fossdev@gmail.com>
Last-Update: 2014-100-06
--- bowtie-1.2.2/diff_sample.h 2017-11-03 01:25:56.000000000 +0100
+++ bowtie-1.2.2/diff_sample.h 2019-02-18 12:50:37.894674282 +0100
@@ -979,7 +979,7 @@
{
Timer timer(cout, " Invoking Larsson-Sadakane on ranks time: ", this->verbose());
VMSG_NL(" Invoking Larsson-Sadakane on ranks");
- _Context_LSS<TIndexOff> c;
+ ContextLss_<TIndexOff> c;
c.suffixsort(
(TIndexOff*)begin(_isaPrime, Standard()),
(TIndexOff*)begin(sPrime, Standard()),
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