sci-biology/bowtie/files/bowtie-1.2.2-fix-isa-return-type.patch


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From 58c6ac97b1938909881877ef83167f5eff0e8ab1 Mon Sep 17 00:00:00 2001
From: Rone Charles <rone_charles@fastmail.com>
Date: Tue, 4 Sep 2018 21:06:39 -0400
Subject: [PATCH] Fix isa return type

---
 ebwt.h | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ebwt.h b/ebwt.h
index fe6300cc..8f886b8d 100644
--- a/ebwt.h
+++ b/ebwt.h
@@ -862,7 +862,7 @@ class Ebwt {
 	TIndexOffU*   ftab() const         { return _ftab; }
 	TIndexOffU*   eftab() const        { return _eftab; }
 	TIndexOffU*   offs() const         { return _offs; }
-	uint32_t*   isa() const          { return _isa; } /* check */
+	TIndexOffU*   isa() const          { return _isa; } /* check */
 	TIndexOffU*   plen() const         { return _plen; }
 	TIndexOffU*   rstarts() const      { return _rstarts; }
 	uint8_t*    ebwt() const         { return _ebwt; }