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--- Makefile.ori 2016-02-12 01:58:32.000000000 +0100
+++ Makefile 2016-03-15 16:55:53.726069350 +0100
@@ -1,7 +1,4 @@
-
-CC = g++ -Wall -ggdb
-CC = g++ -pg
-CC = g++
+CXX ?= g++
# without OpenMP
@@ -9,9 +6,9 @@
# in command line:
# make openmp=yes
ifeq ($(openmp),no)
- CCFLAGS = -DNO_OPENMP
+ CXXFLAGS += -DNO_OPENMP
else
- CCFLAGS = -fopenmp
+ CXXFLAGS += -fopenmp
endif
# support debugging
@@ -19,13 +16,13 @@
# make debug=yes
# make openmp=yes debug=yes
ifeq ($(debug),yes)
-CCFLAGS += -ggdb
+CXXFLAGS += -ggdb
else
-CCFLAGS += -O2
+CXXFLAGS ?= -O2
endif
ifdef MAX_SEQ
-CCFLAGS += -DMAX_SEQ=$(MAX_SEQ)
+CXXFLAGS += -DMAX_SEQ=$(MAX_SEQ)
endif
#LDFLAGS = -static -o
@@ -34,10 +31,10 @@
PROGS = cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454
# Propagate hardening flags
-CCFLAGS := $(CPPFLAGS) $(CCFLAGS) $(CXXFLAGS)
+CXXFLAGS := $(CPPFLAGS) $(CXXFLAGS)
.c++.o:
- $(CC) $(CCFLAGS) -c $<
+ $(CXX) $(CXXFLAGS) -c $<
all: $(PROGS)
@@ -47,49 +44,49 @@
# programs
cd-hit: cdhit-common.o cdhit-utility.o cdhit.o
- $(CC) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
+ $(CXX) $(CXXFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
cd-hit-2d: cdhit-common.o cdhit-utility.o cdhit-2d.o
- $(CC) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
+ $(CXX) $(CXXFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
cd-hit-est: cdhit-common.o cdhit-utility.o cdhit-est.o
- $(CC) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
+ $(CXX) $(CXXFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
cd-hit-est-2d: cdhit-common.o cdhit-utility.o cdhit-est-2d.o
- $(CC) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
cd-hit-div: cdhit-common.o cdhit-utility.o cdhit-div.o
- $(CC) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
+ $(CXX) $(CXXFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
cd-hit-454: cdhit-common.o cdhit-utility.o cdhit-454.o
- $(CC) $(CCFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-454
+ $(CXX) $(CXXFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-454
# objects
cdhit-common.o: cdhit-common.c++ cdhit-common.h
- $(CC) $(CCFLAGS) cdhit-common.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-common.c++ -c
cdhit-utility.o: cdhit-utility.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit-utility.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-utility.c++ -c
cdhit.o: cdhit.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit.c++ -c
cdhit-2d.o: cdhit-2d.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit-2d.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-2d.c++ -c
cdhit-est.o: cdhit-est.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit-est.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-est.c++ -c
cdhit-est-2d.o: cdhit-est-2d.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit-est-2d.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.c++ -c
cdhit-div.o: cdhit-div.c++ cdhit-common.h
- $(CC) $(CCFLAGS) cdhit-div.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-div.c++ -c
cdhit-454.o: cdhit-454.c++ cdhit-common.h
- $(CC) $(CCFLAGS) cdhit-454.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-454.c++ -c
-PREFIX ?= /usr/local/bin
+PREFIX ?= $(DESTDIR)/usr/local/bin
install:
for prog in $(PROGS); do \
--- cd-hit-auxtools/Makefile.ori 2016-03-15 17:02:39.986070411 +0100
+++ cd-hit-auxtools/Makefile 2016-03-15 17:05:00.556070779 +0100
@@ -1,9 +1,8 @@
+CXX ?= g++
-CC = g++
-
-CFLAGS = -Wall -Wno-unused -I. -Imintlib
+CXXFLAGS ?= -Wall -Wno-unused
LFLAGS = -fPIC
-
+CPPFLAGS = -I. -Imintlib
UNAME = $(shell uname)
@@ -18,7 +17,7 @@
ifeq ($(debug),yes)
CXXFLAGS += -ggdb
else
-CFLAGS += -O2
+CXXFLAGS ?= -O2
endif
@@ -32,16 +31,16 @@
.SUFFIXES: .c .obj .cpp .cc .cxx .C
.cxx.o:
- $(CC) -c $(CFLAGS) -o $@ $<
+ $(CXX) -c $(CXXFLAGS) $(CPPFLAGS) -o $@ $<
cd-hit-dup: $(OBJECTS) cdhit-dup.o
- $(CC) $(LFLAGS) $(OBJECTS) cdhit-dup.o -o cd-hit-dup
+ $(CXX) $(CXXFLAGS) $(LFLAGS) $(OBJECTS) cdhit-dup.o -o cd-hit-dup
cd-hit-lap: $(OBJECTS) cdhit-lap.o
- $(CC) $(LFLAGS) $(OBJECTS) cdhit-lap.o -o cd-hit-lap
+ $(CXX) $(CXXFLAGS) $(LFLAGS) $(OBJECTS) cdhit-lap.o -o cd-hit-lap
read-linker: $(OBJECTS) read-linker.o
- $(CC) $(LFLAGS) $(OBJECTS) read-linker.o -o read-linker
+ $(CXX) $(CXXFLAGS) $(LFLAGS) $(OBJECTS) read-linker.o -o read-linker
clean:
rm $(OBJECTS) cdhit-dup.o cdhit-lap.o read-linker.o
|
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