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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=3
DESCRIPTION="clview is an assembly .ace file viewer from TIGR Gene Indices project tools"
HOMEPAGE="http://sourceforge.net/projects/clview"
SRC_URI="http://sourceforge.net/projects/clview/files/source%20code/clview_src.tar.gz
ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_src.tar.gz
ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_linux_i386.tar.gz"
# the ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/tgi_cpp_library.tar.gz
# contain maybe an older but definitely larger set of .cpp files compared to clview/gcl/
# contents. clview compiles against both versions with same warning messages from g++.
#
# mokrejs@vrapenec$ ls -la /var/tmp/portage/sci-biology/clview-0.1/work/gclib/
# total 188
# drwxr-xr-x 2 mmokrejs mmokrejs 4096 Dec 2 22:23 .
# drwx------ 5 mmokrejs portage 4096 Dec 2 22:23 ..
# -rw-r--r-- 1 mmokrejs mmokrejs 11632 Sep 17 2008 AceParser.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 906 Sep 14 2008 AceParser.h
# -rw-r--r-- 1 mmokrejs mmokrejs 32276 Dec 2 22:23 AceParser.o
# -rw-r--r-- 1 mmokrejs mmokrejs 11012 Jan 22 2009 GBase.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 9200 Dec 16 2008 GBase.h
# -rw-r--r-- 1 mmokrejs mmokrejs 8844 Dec 2 22:23 GBase.o
# -rw-r--r-- 1 mmokrejs mmokrejs 16813 Jul 29 2008 GHash.hh
# -rw-r--r-- 1 mmokrejs mmokrejs 16516 Sep 10 2008 GList.hh
# -rw-r--r-- 1 mmokrejs mmokrejs 11221 Jan 22 2009 LayoutParser.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 6246 Sep 14 2008 LayoutParser.h
# -rw-r--r-- 1 mmokrejs mmokrejs 32956 Dec 2 22:23 LayoutParser.o
# mokrejs@vrapenec$ ls -la /var/tmp/portage/sci-biology/clview-0.1/work/tgi_cl/gcl/
# total 268
# drwxr-xr-x 2 mmokrejs mmokrejs 4096 Nov 18 2008 .
# drwxr-xr-x 3 mmokrejs mmokrejs 4096 Oct 18 2006 ..
# -rw-r--r-- 1 mmokrejs mmokrejs 9515 Nov 7 2005 AceParser.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 886 Nov 7 2005 AceParser.h
# -rw-r--r-- 1 mmokrejs mmokrejs 10768 Nov 7 2005 BitHash.hh
# -rw-r--r-- 1 mmokrejs mmokrejs 7250 Nov 7 2005 GArgs.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 2507 Nov 7 2005 GArgs.h
# -rw-r--r-- 1 mmokrejs mmokrejs 10156 Nov 18 2008 GBase.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 8142 Nov 18 2008 GBase.h
# -rw-r--r-- 1 mmokrejs mmokrejs 14742 Nov 7 2005 GCdbYank.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 1831 Nov 7 2005 GCdbYank.h
# -rw-r--r-- 1 mmokrejs mmokrejs 16723 Nov 7 2005 GFastaFile.h
# -rw-r--r-- 1 mmokrejs mmokrejs 16245 Nov 7 2005 GHash.hh
# -rw-r--r-- 1 mmokrejs mmokrejs 15561 Nov 7 2005 GList.hh
# -rw-r--r-- 1 mmokrejs mmokrejs 28 Nov 7 2005 GReadBuf.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 4022 Nov 7 2005 GReadBuf.h
# -rw-r--r-- 1 mmokrejs mmokrejs 48 Nov 7 2005 GShMem.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 4012 Nov 7 2005 GShMem.h
# -rw-r--r-- 1 mmokrejs mmokrejs 32875 Nov 7 2005 GString.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 8453 Nov 7 2005 GString.h
# -rw-r--r-- 1 mmokrejs mmokrejs 11157 Nov 7 2005 LayoutParser.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 6063 Nov 7 2005 LayoutParser.h
# -rw-r--r-- 1 mmokrejs mmokrejs 20253 Nov 7 2005 gcdb.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 6941 Nov 7 2005 gcdb.h
# -rw-r--r-- 1 mmokrejs mmokrejs 8998 Nov 7 2005 gcompress.cpp
# -rw-r--r-- 1 mmokrejs mmokrejs 3670 Nov 7 2005 gcompress.h
#
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND="=x11-libs/fox-1.6*"
RDEPEND="${DEPEND}"
S=${WORKDIR}
src_unpack() {
unpack clview_src.tar.gz
}
src_prepare() {
# FIXME: we have to run `/usr/bin/fox-config --cflags' to yield
# `-I/usr/include/fox-1.6'
# similarly `fox-config --libs' to yield e.g.
# `-lFOX-1.6 -lXext -lX11 -lXft -lXrender -lfontconfig -lfreetype -lz -lX11
# -lXcursor -lXrandr -ldl -lpthread -lrt -ljpeg -lpng -ltiff -lz -lbz2 -lm
# -lcups -lnsl -lGLU -lGL'
FOXVERSION=`WANT_FOX="1.6" fox-config --version`
FOXPREFIX=`WANT_FOX="1.6" fox-config --prefix`
FOXINCPATH=`WANT_FOX="1.6" fox-config --cflags`
FOXLIBS=`WANT_FOX="1.6" fox-config --libs`
einfo "Discovered path to fox ${FOXVERSION} files: ${FOXINCPATH}\n${FOXLIBS}"
sed -i "s#FOXPREFIX = /mylocal/geo#FOXPREFIX = ${FOXPREFIX}#" clview/Makefile || die "Failed to hack FOXPREFIX in clview/Makefile"
sed -i "s#FOXINCDIR := .*#FOXINCDIR := ${FOXINCPATH}#" clview/Makefile || die "Failed to hack FOXINCDIR in clview/Makefile"
sed -i "s#-I\${FOXINCDIR}#\${FOXINCDIR}#" clview/Makefile || die "Failed to revert the extra -I we introduced on a previous line to clview/Makefile"
sed -i "s#FOXLIBDIR := .*#FOXLIBDIR := ${FOXPREFIX}/lib#" clview/Makefile || die "Failed to hack FOXLIBDIR in clview/Makefile"
sed -i "s#LOADLIBS :=.*#LOADLIBS := ${FOXLIBS}#" clview/Makefile || die "Failed to hack LOADLIBS in clview/Makefile"
sed -i "s#-I-#-I #" clview/Makefile || die
# see tgi_cl/gcl/
sed -i "s#TGICLASSDIR := /tucan/geo/src/tgi_cl#TGICLASSDIR := ../gcl#" clview/Makefile || die
}
src_compile(){
cd "${S}"/clview || die
emake || die
}
src_install() {
# install at least the binaries for clview when we cannot compile it
dobin clview/clview || die "Failed to install clview binary"
}
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