blob: bca49517403fded051dd8fb5296be866d71b1efb (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
|
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit java-pkg-2 java-ant-2
DESCRIPTION="Ab initio- and ad hoc evidence-based (RNA-Seq, BLAST) gene/ORF predictor"
HOMEPAGE="https://sourceforge.net/projects/conradcrf"
SRC_URI="https://downloads.sourceforge.net/project/conradcrf/conradcrf/Version%201/conradSrc.zip -> ${P}.zip"
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64"
RDEPEND="
>=virtual/jre-1.5:*
<virtual/jdk-1.9:*
dev-java/commons-logging
>=dev-java/commons-lang-2.1:*
dev-java/colt
dev-java/dom4j
"
# spring # see bug #97004
# dev-java/LBFGS # LBFGS is a numericla library we use internally for the solver
DEPEND="${RDEPEND}
>=virtual/jdk-1.5:*
<virtual/jdk-1.9:*
dev-java/ant-core
>=dev-java/jfreechart-1.0.3
>=dev-java/jcommon-1.0.6
>=dev-java/commons-math-1.1
"
BDEPEND="app-arch/unzip"
S="${WORKDIR}"
src_prepare(){
default
sed -e s'#lib/conrad.jar#/usr/share/conrad/lib/conrad.jar#' -i bin/conrad.sh || die
}
src_compile(){
cd dev || die
ant compile || die
}
src_install() {
dobin bin/conrad.sh
java-pkg_dojar lib/conrad.jar
java-pkg_dolauncher conrad --jar conrad.jar
dodoc -r docs models samples trainingFiles
}
|
GitWeb
