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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit perl-module perl-app
DESCRIPTION="Convert whole CONSED dataset to a GAP4 project"
HOMEPAGE="http://genome.imb-jena.de/software/consed2gap/"
SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz -> ${P}.tgz"
LICENSE="FLI-Jena"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}
dev-lang/perl:=
sci-libs/io_lib
sci-biology/caftools
sci-biology/align_to_scf"
S="${WORKDIR}/${PN}"
src_prepare(){
sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/phrap2caf || die
sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/badgerGetOpt.pl || die
}
src_install(){
dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl
dodir /usr/share/"${PN}"
mv example "${ED}"/usr/share/"${PN}"/ || die
cd bin && perl-module_src_install
}
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