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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit java-pkg-2 java-ant-2
DESCRIPTION="Java tools and APIs for efficient compression of sequence read data"
HOMEPAGE="http://www.ebi.ac.uk/ena/software/cram-toolkit
https://github.com/enasequence/cramtools"
SRC_URI="https://github.com/enasequence/cramtools/archive/v3.0.tar.gz -> ${P}.tar.gz"
LICENSE="Apache-2.0"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="
>=virtual/jdk-1.7:*
dev-java/ant-core
dev-java/htsjdk"
RDEPEND="
${DEPEND}
>=virtual/jre-1.7:*"
# TODO: zap bundled htsjdk to ensure it uses dev-java/htsjdk?
# https://github.com/enasequence/cramtools/issues/58
# https://github.com/enasequence/cramtools/issues/59
src_compile(){
ant -f build/build.xml runnable || die
}
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