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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_{7..9} )
inherit distutils-r1
DESCRIPTION="Remove adapter sequences from high-throughput sequencing data"
HOMEPAGE="https://github.com/marcelm/cutadapt"
SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86"
DEPEND="
dev-python/dnaio[${PYTHON_USEDEP}]
dev-python/xopen[${PYTHON_USEDEP}]
"
RDEPEND="
${PYTHON_DEPS}
${DEPEND}
"
BDEPEND="
test? (
dev-python/cython
dev-python/pytest-mock
dev-python/pytest-timeout
dev-python/sphinx
dev-python/sphinx-issues
)
"
distutils_enable_tests pytest
# needs call to installed cutadapt executable
python_test() {
distutils_install_for_testing
pytest -vv || die "pytest failed with ${EPYTHON}"
}
|
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