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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit eutils distutils-r1
[ "$PV" == "9999" ] && inherit subversion
DESCRIPTION="EST assembly and annotation pipeline for chado/gbrowse2 display"
HOMEPAGE="http://code.google.com/p/est2assembly/"
ESVN_REPO_URI="http://est2assembly.googlecode.com/svn/trunk"
if [ "$PV" == "9999" ]; then
ESVN_REPO_URI="http://est2assembly.googlecode.com/svn/trunk"
KEYWORDS=""
else
SRC_URI="http://est2assembly.googlecode.com/files/est2assembly_"${PV}".tar.gz"
KEYWORDS="~amd64 ~x86"
fi
LICENSE="GPL-3"
SLOT="0"
IUSE=""
# still missing
# annot8r http://nematodes.org/bioinformatics/annot8r/index.shtml and http://nematodes.org/bioinformatics/Annot8r_physprop/
# prot4EST http://nematodes.org/bioinformatics/prot4EST/
DEPEND="
app-arch/pbzip2
dev-lang/perl
dev-perl/Time-Progress
sci-biology/fasta
sci-biology/ssaha2-bin
sci-biology/mira
sci-biology/emboss
sci-biology/bioperl"
RDEPEND="${DEPEND}"
# more install tricks in "${S}"/install.pl
pkg_postinst(){
einfo "The package uses mira and newbler assemblers"
}
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