blob: 527455413a85e7396ab72faae2fbfb7ba8ad08b1 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
|
# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
inherit java-pkg-2 eutils
DESCRIPTION="Perl-based wrapper around java apps to quality control FASTA/FASTQ sequence files"
HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v"${PV}"_source.zip"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="sci-biology/picard
>=virtual/jrei-1.6"
RDEPEND="${DEPEND}"
S="${WORKDIR}"/FastQC
src_install(){
dobin fastqc
# TODO: need to compile java in uk/ac/babraham/FastQC/
# and decide whether jbzip2-0.9.jar and sam-1.32.jar are standard java libs and from samtools or whetehr not
}
|