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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
inherit java-pkg-2 eutils
DESCRIPTION="Perl-based wrapper around java apps to quality control FASTA/FASTQ sequence files"
HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v"${PV}"_source.zip"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="sci-biology/picard
>=virtual/jrei-1.6"
RDEPEND="${DEPEND}"
S="${WORKDIR}"/FastQC
src_install(){
dobin fastqc
# TODO: need to compile java in uk/ac/babraham/FastQC/
# and decide whether jbzip2-0.9.jar is a standard java lib or not
# ignore the sam-1.32.jar, that is likely library already in sci-biology/picard
}
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