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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit java-pkg-2 eutils java-ant-2 prefix
DESCRIPTION="Quality control FASTA/FASTQ sequence files"
HOMEPAGE="https://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
SRC_URI="https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v"${PV}"_source.zip"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64"
RDEPEND="dev-lang/perl"
DEPEND="${RDEPEND} >=virtual/jdk-1.5:*"
BDEPEND="app-arch/unzip"
S="${WORKDIR}"/FastQC
src_prepare(){
cp "${FILESDIR}"/build.xml . || die
default
}
src_compile(){
ant || die
}
src_install(){
insinto "opt/${PN}"
doins -r bin
chmod a+x "${ED}/opt/${PN}/bin/fastqc"
# Add the package's bin directory to the PATH.
doenvd "${FILESDIR}/00fastqc"
if use prefix ; then
hprefixify "${ED}/etc/env.d/00fastqc"
fi
dodoc README.txt RELEASE_NOTES.txt
}
pkg_postinst() {
ewarn "Remember to run: env-update && source \"${EPREFIX}/etc/profile\" if you plan"
ewarn "to use this tool in a shell before logging out (or restarting"
ewarn "your login manager)"
}
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