sci-biology/fastx_toolkit/fastx_toolkit-0.0.14.ebuild


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33

# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$

EAPI=5

inherit autotools

DESCRIPTION="Tools for Short Read FASTA/FASTQ file processing"
HOMEPAGE="http://hannonlab.cshl.edu/fastx_toolkit"
SRC_URI="https://github.com/agordon/fastx_toolkit/releases/download/"${PV}"/"${P}".tar.bz2"

LICENSE="AGPL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

DEPEND=""
RDEPEND="${DEPEND}
	dev-perl/PerlIO-gzip
	dev-perl/GDGraph
	sys-apps/sed
	sci-visualization/gnuplot
	sci-biology/libgtextutils"

src_prepare() {
	# remove pointless installation of generic autoconf-archive m4 macros
	# causing file collisions with sys-devel/autoconf-archive
	rm m4/Makefile.am || die
	sed -i -e 's/m4 //g' Makefile.am || die

	eautoreconf
}