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# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild,v 1.9 2007/07/29 17:07:38 phreak Exp $
EAPI="2"
inherit perl-module webapp
MY_P="GBrowse-${PV}"
DESCRIPTION="The generic genome browser provides a display of genomic annotations on interactive web pages"
HOMEPAGE="http://gmod.org"
SRC_URI="mirror://sourceforge/gmod/${MY_P}.tar.gz"
LICENSE="Artistic"
# webapp ebuilds do not set SLOT
KEYWORDS="~x86 ~amd64"
IUSE="-minimal" # lwp moby scf
S="${WORKDIR}/${MY_P}"
# TODO: dev-perl/MOBY, dev-perl/Bio-SCF, dev-perl/Safe-World (not compatible w/perl-5.10)
DEPEND=">=dev-lang/perl-5.8.8
>=sci-biology/bioperl-1.6
>=dev-perl/GD-2.07
dev-perl/IO-String
virtual/perl-Digest-MD5
>=dev-perl/CGI-Session-4.03
dev-perl/Statistics-Descriptive
>=dev-perl/Bio-Graphics-1.97
dev-perl/JSON
dev-perl/libwww-perl"
RDEPEND="${DEPEND}
>=www-servers/apache-2.0.47
dev-perl/DBI
|| ( dev-perl/DBD-Pg dev-perl/DBD-mysql )
!minimal? (
dev-perl/File-NFSLock
dev-perl/FCGI
perl-core/Math-BigInt
dev-perl/Digest-SHA1
dev-perl/Crypt-SSLeay
dev-perl/Net-SMTP-SSL
dev-perl/GD-SVG
dev-perl/Net-OpenID-Consumer
virtual/perl-DB_File
dev-perl/DB_File-Lock
)"
src_prepare() {
sed -i 's/return unless -t STDIN/return/' install_util/GBrowseInstall.pm || die
}
src_configure() {
webapp_src_preinst
perl Makefile.PL \
HTDOCS="${D}/${MY_HTDOCSDIR}" \
CGIBIN="${D}/${MY_HTDOCSDIR}/cgi-bin" \
CONF="${D}/etc" \
PREFIX="${D}/usr" \
PACKAGE_DIR="${D}" \
INSTALLDIRS=vendor \
GBROWSE_ROOT=gbrowse \
DESTDIR="${ROOT}" \
|| die
}
src_install() {
mydoc="Changes README TODO INSTALL"
perl-module_src_install
# TODO: write our own readme
webapp_postinst_txt en "${S}/INSTALL"
webapp_src_install
# find "${D}" -type f | xargs sed -i "s|${D}||" || die
}
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