blob: 45ee5b82f570be6d5ea014ebf3d65b9e5efa4bba (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
|
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild,v 1.9 2007/07/29 17:07:38 phreak Exp $
inherit perl-app
MY_PN="Generic-Genome-Browser"
# I don't know if the '--' is a typo... TODO contact somebody and find out.
MY_P="${MY_PN}--${PV}"
DESCRIPTION="The generic genome browser provides a display of genomic annotations on interactive web pages"
HOMEPAGE="http://www.gmod.org"
SRC_URI="mirror://sourceforge/gmod/${MY_P}.tar.gz"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~x86 ~ppc ~amd64"
IUSE="mysql gd"
S="${WORKDIR}/${MY_PN}-${PV}"
DEPEND="
>=sci-biology/bioperl-1.4
>=virtual/perl-CGI-2.56
>=dev-perl/GD-2.07
dev-perl/DBI
virtual/perl-Digest-MD5
dev-perl/Text-Shellwords
dev-perl/libwww-perl
dev-perl/XML-Parser
dev-perl/XML-Writer
dev-perl/XML-Twig
dev-perl/XML-DOM
dev-perl/Bio-Das
gd? (
dev-perl/GD-SVG
)
mysql?
(
>=virtual/mysql-4.0
dev-perl/DBD-mysql
)
>=www-servers/apache-2.0.47"
RDEPEND="${DEPEND}"
src_compile() {
cd ${S}
# ewarn "Modifying Makefile.PL to avoid sandbox violation"
sed -e "s:WriteMakefile(:WriteMakefile(\n 'PREFIX'=>'${D}/usr',\n'INSTALLDIRS' => 'vendor',:" -i Makefile.PL \
|| die "Failed to sed Makefile.PL"
perl Makefile.PL \
HTDOCS=/var/www/localhost/htdocs \
CGIBIN=/var/www/localhost/cgi-bin \
CONF=/etc \
PREFIX=/var/www/localhost \
DESTDIR=${D} \
INSTALLDIRS=vendor
#perl-module_src_compile || die "Make failed"
perl-module_src_test || die "Test Failed"
}
# Might want to look at how to use webapp with this.
src_install() {
dodir /etc
dodir /var/www/localhost/htdocs
dodir /var/www/localhost/cgi-bin
mydoc="History README TODO INSTALL"
dodir /usr/share/${PF}/tutorial
cd ${S}/docs/tutorial
tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
cd ${S}
sed -e "s:my \$dir = \":my \$dir = \"${D}/:" -i install_util/conf_install.PLS || die "sed1 failed"
sed -e "s:my \$ht_target = \":my \$ht_target = \"${D}/:" -i install_util/htdocs_install.PLS || die "sed2 failed"
sed -e "s:my \$cgi_target = :my \$cgi_target = \"${D}\"\.:" -i install_util/cgi_install.PLS || die "sed3 failed"
perl-module_src_install
}
|
GitWeb