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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
MY_P="GRAPPA20"
DESCRIPTION="Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms"
HOMEPAGE="http://www.cs.unm.edu/~moret/GRAPPA/"
SRC_URI="http://www.cs.unm.edu/~moret/GRAPPA/${MY_P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
S="${WORKDIR}/${MY_P}"
src_prepare() {
sed -i -e '/CFLAGS := -mcpu/ d' -e 's/\(CFLAGS := -D${OS}\)/\1 ${CFLAGS}/' "${S}/Makefile" || die
}
src_install() {
dobin grappa
dosym grappa /usr/bin/invdist
# avoid file collision with emboss and rename distmat to distmat_grappa
dosym grappa /usr/bin/distmat_grappa
dodoc README
}
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