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# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python3_{5,6} ) # requires python >= 3.1 but more features with >=3.5
# https://github.com/Ensembl/Bio-DB-HTS/issues/30
inherit git-r3 eutils flag-o-matic
DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)"
HOMEPAGE="https://github.com/TGAC/KAT"
EGIT_REPO_URI="https://github.com/TGAC/KAT.git"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS=""
IUSE="cpu_flags_x86_sse doc"
DEPEND="
>=dev-libs/boost-1.52
dev-python/tabulate
dev-python/matplotlib
dev-python/numpy
sci-libs/scipy
doc? ( dev-python/sphinx )"
RDEPEND="${DEPEND}"
# contains bundled a *modified* version of jellyfish-2.2.0 (libkat_jellyfish.{a,so})
# contains embedded sci-biology/seqan
src_prepare(){
sh build_boost.sh || die
sh autogen.sh . || die
local myconf=()
myconf+=( --disable-gnuplot ) # python3 does better image rendering, no need for gnuplot
use cpu_flags_x86_sse && myconf+=( $(use_with cpu_flags_x86_sse sse) ) # pass down to jellyfish-2.20/configure
PYTHON_VERSION=3 econf ${myconf[@]}
}
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