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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit distutils-r1 git-r3
DESCRIPTION="In-memory K-mer counting in DNA/RNA/protein sequences"
HOMEPAGE="https://github.com/ged-lab/khmer"
#SRC_URI=""
EGIT_REPO_URI="git://github.com/ged-lab/khmer"
LICENSE="BSD"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND=""
RDEPEND="sci-biology/screed"
#python_prepare_all(){
# rm -rf lib/{bzip2,zlib} || die
#
# sed \
# -e 's:zlib/zlib.h:zlib.h:g' \
# -e 's:bzip2/bzlib.h:bzlib.h:g' \
# -i lib/read_parsers.hh lib/counting.cc || die
#
# sed \
# -e "/extra_objects/d" \
# -e "s:'nose >= 1.0', ::g" \
# -e "s:'sphinx',::g" \
# -e '/libraries/s:, ]:, "z", "bz2", ]:g' \
# -e "s:'-O3',::g" \
# -i setup.py || die
#
# distutils-r1_python_prepare_all
#}
# setup.py --libraries z,bz2 || die
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