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# ChangeLog for sci-biology/ncbi-tools++
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
23 Jun 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ChangeLog:
add patches for 12.0.0 to support autoconf-2.60 (so far 2.59 was needed),
patches from upstream:
http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=62745
http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=62750
http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=62760
14 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-9.0.0-r1.ebuild:
Support at least when user passes USE="gnutls -ssl -openssl" but what we
really want is to prefer gnutls over openssl if both are available on the
system.
14 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-9.0.0-r1.ebuild,
+files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch:
Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with
line
offset changes.
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
+files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch,
+files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch:
Fix URL to point to a public SVN repository (an upstream patch from email
list):
Date: Sun, 28 Jul 2013 22:05:34 -0400
CC: <cpp@ncbi.nlm.nih.gov>
Subject: Re: [C++] new project startup example needed
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-12.0.0.ebuild,
files/ncbi-tools++-9.0.0-fix-creaders-linking.patch,
+files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch,
files/ncbi-tools++-12.0.0-fix-creaders-linking.patch:
Added an upstream patch from:
Date: Wed, 28 Aug 2013 10:50:29 -0400
List cpp <cpp@ncbi.nlm.nih.gov>
Subject: Re: [C++] error building ncbi toolkit v.12.0.0
Fixed line offsets in the ncbi-tools++-12.0.0-fix-creaders-linking.patch
file.
Fixed file path in ncbi-tools++-9.0.0-fix-creaders-linking.patch header.
The patches copied blindly from ncbi-tools++-9.0.0-r1 under 12.0.0 need to be
adjusted still to have correct line numbers. They do NOT apply cleanly at the
moment.
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
files/ncbi-tools++-9.0.0-as-needed.patch,
+files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.
patch, files/ncbi-tools++-12.0.0-as-needed.patch:
files/ncbi-tools++-12.0.0-as-needed.patch
files/ncbi-tools++-9.0.0-as-needed.patch
Remove redundant connect per message from Aaron Ucko <ucko@ncbi.nlm.nih.gov>:
> +DLL_LIB = xncbi xutil seqset connect xconnect xnetblast
Then simply remove connect, which is redundant with xconnect. (connect
consists of code shared with NCBI's C Toolkit; xconnect adds a C++
layer.)
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-12.0.0.ebuild,
+files/ncbi-tools++-12.0.0-fix-creaders-linking.patch:
No, the fix-creaders-linking is needed for 12.0.0 as well.
*ncbi-tools++-12.0.0 (13 Sep 2013)
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ncbi-tools++-12.0.0.ebuild, +files/ncbi-tools++-12.0.0-as-needed.patch,
+files/ncbi-tools++-12.0.0-conf-opts.patch:
Latest release which needs so far only the two Gentoo patches. Would
be better to drop ${PV} from their filename to avoid their duplication
I think.
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-9.0.0-r1.ebuild,
+files/ncbi-tools++-9.0.0-fix-creaders-linking.patch:
add glew to dependencies inferrred via mesa
fix lib/libxobjread.so: undefined reference to 'AlignmentFileFree' message by
upstream patch
12 Jun 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
Drop empty line
12 Jun 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
Drop autotools.eclass
01 Apr 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
Some Prefix love
01 Apr 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
Some Prefix love
03 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Document USE
03 Mar 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0.ebuild,
ncbi-tools++-9.0.0-r1.ebuild:
Clean whitespace errors
03 Mar 2013; Justin Lecher <jlec@gentoo.org> +metadata.xml:
Add metadata.xml
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