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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit distutils-r1 eutils
DESCRIPTION="Analysis package for next-generation sequencing data and prepare for IGV display"
HOMEPAGE="http://www.vicbioinformatics.com/software.nesoni.shtml"
SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}
sci-biology/shrimp
sci-biology/bowtie
sci-biology/mummer
sci-biology/biopython
sci-biology/picard
dev-lang/R"
# sci-biology/freebayes
# SplitsTree4 http://www.splitstree.org/
# BioConductor (limma, edgeR, goseq)
# seriation
# NMF
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