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# Copyright 2021-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
PYTHON_COMPAT=( python3_{10..10} )
DISTUTILS_USE_PEP517=setuptools
inherit distutils-r1
DESCRIPTION="Create NWB files from proprietary formats."
HOMEPAGE="https://github.com/catalystneuro/neuroconv"
SRC_URI="https://github.com/catalystneuro/neuroconv/archive/refs/tags/v${PV}.tar.gz -> ${P}.gh.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64"
IUSE="+ecephys +icephys +ophys"
RDEPEND="
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/hdmf[${PYTHON_USEDEP}]
dev-python/jsonschema[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
dev-python/psutil[${PYTHON_USEDEP}]
dev-python/pynwb[${PYTHON_USEDEP}]
dev-python/pyyaml[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/tqdm[${PYTHON_USEDEP}]
dev-vcs/dandi-cli[${PYTHON_USEDEP}]
ecephys? (
dev-python/spikeinterface[${PYTHON_USEDEP}]
)
icephys? (
dev-python/neo[${PYTHON_USEDEP}]
)
ophys? (
sci-biology/roiextractors[${PYTHON_USEDEP}]
)
"
BDEPEND="
test? (
dev-python/parameterized[${PYTHON_USEDEP}]
)
"
distutils_enable_tests pytest
python_test() {
# Additional tests require complex data getting infrastructure, ophys tests still have issues:
# https://github.com/catalystneuro/neuroconv/issues/305
local my_tests=( "tests/test_minimal" )
use ecephys && my_tests+=( "tests/test_ecephys" )
#use ophys && my_tests+=( "tests/test_ophys" )
epytest ${my_tests[*]// /|}
}
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