blob: 3f0741815b786bf97a2decf9a55b0e0507ca7494 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit toolchain-funcs
DESCRIPTION="Split Illumina Nextera long mate-pairs"
HOMEPAGE="https://github.com/richardmleggett/nextclip
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519"
SRC_URI="https://github.com/richardmleggett/nextclip/archive/NextClip_v1.3.1.tar.gz"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64 ~x86"
DEPEND=""
RDEPEND="${DEPEND}
>=dev-lang/R-2.12.2
>=sci-biology/bwa-0.6.1
dev-texlive/texlive-latex"
S="${WORKDIR}"/"${PN}"-NextClip_v"${PV}"
src_prepare(){
default
sed -e 's/$(ARCH)//;s/$(MACFLAG)//' -i Makefile || die
sed -e "s/CC=gcc/$(tc-getCC)/;s/-Wall -O3/${CFLAGS}/" -i Makefile || die
}
src_compile(){
emake all
}
src_install(){
dobin bin/nextclip
insinto /usr/share/"${PN}"
doins scripts/*
dodoc nextclipmanual.pdf README.md
}
|