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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_{7} )
inherit distutils-r1 git-r3
DESCRIPTION="Fast and easy statistical learning on NeuroImaging data"
HOMEPAGE="http://nilearn.github.io/"
SRC_URI=""
EGIT_REPO_URI="https://github.com/nilearn/nilearn"
LICENSE="BSD"
SLOT="0"
KEYWORDS=""
IUSE="+plot test"
# Tests attempt to download external data.
RESTRICT="test"
DEPEND="
test? (
${RDEPEND}
dev-python/nose[${PYTHON_USEDEP}]
)
dev-python/setuptools[${PYTHON_USEDEP}]
"
RDEPEND="
dev-python/joblib[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/scikit-learn[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]
plot? ( dev-python/matplotlib[${PYTHON_USEDEP}] )"
# (Temporarily) commented out, since Gentoo sci-libs/scikit-learn decided it
# is a mess to maintain system joblib usage
#PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" )
python_prepare_all() {
# upstream is reluctant to *not* depend on bundled scikit-learn:
# https://github.com/nilearn/nilearn/pull/1398
# (Temporarily) commented out, since Gentoo sci-libs/scikit-learn decided it
# is a mess to maintain system joblib usage
#local f
#for f in nilearn/{*/*/,*/,}*.py; do
# sed -r \
# -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \
# -e 's/from (sklearn|\.|)\.externals import/import/' \
# -i $f || die
#done
distutils-r1_python_prepare_all
}
python_test() {
echo "backend: Agg" > matplotlibrc
#MPLCONFIGDIR=. nosetests -v || die
MPLCONFIGDIR=. pytest -vv || die
}
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